Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_B03
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             174   6e-46
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.7  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  174 bits (424), Expect = 6e-46
 Identities = 81/82 (98%), Positives = 81/82 (98%)
 Frame = -3

Query: 697 EMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 518
           EMAT ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 517 DVDIRKDLYANTVLSGGTTMYP 452
           DVDIRKDLYANTVLSGGTTMYP
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYP 82



 Score =  106 bits (254), Expect = 2e-25
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = -1

Query: 450 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 298
           GIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 83  GIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 496 LYANTVLSGGTTMYPWNRRPYAKGNHSSRPIDNE 395
           L +N +L     ++ W R  Y + NH S  +D E
Sbjct: 46  LISNDILPVCNGLWRWIRLTYGQTNHISLTLDLE 79


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 496 LYANTVLSGGTTMYPWNRRPYAKGNHSSRPIDNE 395
           L +N +L     ++ W R  Y + NH S  +D E
Sbjct: 84  LISNDILPVCNGLWRWIRLTYGQTNHISLTLDLE 117


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -1

Query: 690 PPXHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPR 577
           PP    +     +  P   S LS T  ++A+ L   PR
Sbjct: 678 PPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPR 715


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/54 (20%), Positives = 23/54 (42%)
 Frame = -3

Query: 499 DLYANTVLSGGTTMYPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWID 338
           D+++  + +    +Y W    Y  G+   R    +  D+  +   +L  D+W D
Sbjct: 19  DIHSRNLTNSLKVIYEWKYIDYDFGSDEKRQAAIQSGDYNYTMNYLLDTDQWGD 72


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 586 QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 476
           + +FLG+    +   +YN +   D  + KDL+   +L
Sbjct: 328 ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQIL 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,244
Number of Sequences: 438
Number of extensions: 4312
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)