Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_A20
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    28   1.0  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   2.3  
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    27   3.1  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   7.1  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   7.1  

>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 511 YKSVRQSPSIPFDSSKTPARTNLKPSTPSPI 419
           +KS+ + P  P     TP RT + P T SPI
Sbjct: 37  FKSLLEDPVNPIRPVYTPTRTEITPVTLSPI 67


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +2

Query: 497 SDTLIVVHGLLHTIIFQNELNL 562
           +D++  ++ +LH+++FQNEL L
Sbjct: 462 NDSVFSMYKVLHSLVFQNELGL 483


>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 528 RSPWTTIRVSDRAPAYRSTAPRHRPGLISNLPHR 427
           + PWTT+ + ++  AY      H P   S++  +
Sbjct: 63  KQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQK 96


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 42  QQYNNLTRIFTRQIGPG 92
           +QY NL   FTR++ PG
Sbjct: 126 RQYKNLAEFFTRKLKPG 142


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 505 SVRQSPSIPFDSSKTPARTNLKPSTPSPI 419
           SV+ SPS  F S  +P ++ +KP+  S +
Sbjct: 222 SVKSSPSKSFVSISSPVQSTVKPTKASGV 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,610
Number of Sequences: 5004
Number of extensions: 52205
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)