Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_A19
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical ...    29   0.74 
Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical pr...    26   6.9  
Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical
           protein T23C6.5 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +2

Query: 272 GPLLAFCFYYLLHYCPN---GLLVLLVVNKFI 358
           G +L + + Y+LH+ PN   G+LVL+ V + I
Sbjct: 85  GKVLCYSYIYVLHFIPNVSAGILVLVSVERLI 116


>Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical
           protein T19C4.4 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 78  TTTCYSVII*MTSVDISNVYNSNFEQGQQCYFI 176
           TTTC SV + +TS+ I N  N    Q  +  FI
Sbjct: 186 TTTCVSVFVNVTSIAIVNQMNVQVRQEVEYNFI 218


>Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical
           protein ZC412.1 protein.
          Length = 450

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 297 IICYIIVLMGCWFSLW*INSF 359
           +I  +IV M CWF L  +N F
Sbjct: 255 LILMVIVFMACWFPLSAVNLF 275


>Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical
           protein T20F10.1 protein.
          Length = 908

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 290 CFYYLLHYCPNGLLVLLVVNKFI 358
           C Y+++ Y P G ++ L++ K I
Sbjct: 574 CLYFIMEYVPGGDMMTLLIQKGI 596


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,743,656
Number of Sequences: 27780
Number of extensions: 72429
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)