Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_A19
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.48 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   2.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   3.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   3.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   3.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    20   7.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.48
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 255 LFILGRDL-YWLFVSIICYIIVLMGCWFSLW 344
           +F+L R L Y+LF + I   ++++  W S W
Sbjct: 237 VFVLKRRLGYYLFHTYIPTCLIVIMSWVSFW 267


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 285 LFVSIICYIIVLMG 326
           LF++I+C++  L+G
Sbjct: 417 LFIAIVCFVSYLIG 430


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 285 LFVSIICYIIVLMG 326
           LF++I+C++  L+G
Sbjct: 470 LFIAIVCFVSYLIG 483


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +2

Query: 281 LAFCFYYLLHYCPNGLLVLL 340
           +  CF Y+L + P G++ ++
Sbjct: 277 ITICFLYVLSWTPYGVMSMI 296


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/16 (50%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = +2

Query: 296 YYLLH-YCPNGLLVLL 340
           YYL+  Y P+GL+V++
Sbjct: 222 YYLIQIYIPSGLIVII 237


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/16 (50%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = +2

Query: 296 YYLLH-YCPNGLLVLL 340
           YYL+  Y P+GL+V++
Sbjct: 222 YYLIQIYIPSGLIVII 237


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/16 (50%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = +2

Query: 296 YYLLH-YCPNGLLVLL 340
           YYL+  Y P+GL+V++
Sbjct: 161 YYLIQIYIPSGLIVII 176


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 329 TAH*DNNVTNNRNKK 285
           T H +NN  N  NKK
Sbjct: 311 TIHNNNNYNNYNNKK 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,426
Number of Sequences: 438
Number of extensions: 1056
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)