Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_A18
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X89080-1|CAA61451.1| 113|Caenorhabditis elegans dad-1 protein. 122 1e-28
AF039713-4|AAB96727.1| 113|Caenorhabditis elegans Dad (defender... 122 1e-28
Z79600-9|CAJ85761.1| 110|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z79600-8|CAJ85760.1| 147|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z69884-8|CAA93752.2| 582|Caenorhabditis elegans Hypothetical pr... 31 0.41
AY090484-1|AAM11893.1| 582|Caenorhabditis elegans low-affinity ... 31 0.41
U40800-2|AAA81489.2| 137|Caenorhabditis elegans Hypothetical pr... 29 1.7
U40028-10|AAA81121.3| 363|Caenorhabditis elegans Serpentine rec... 28 2.2
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 28 2.2
Z81124-10|CAH60752.1| 241|Caenorhabditis elegans Hypothetical p... 27 3.8
Z68009-5|CAA92007.1| 208|Caenorhabditis elegans Hypothetical pr... 27 5.0
U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide tr... 27 5.0
AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical ... 27 5.0
AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity ... 27 5.0
U41279-3|AAK31422.1| 210|Caenorhabditis elegans Helix loop heli... 27 6.7
AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical ... 27 6.7
AC006675-2|AAK84549.1| 333|Caenorhabditis elegans Serpentine re... 27 6.7
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 26 8.8
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 26 8.8
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 26 8.8
>X89080-1|CAA61451.1| 113|Caenorhabditis elegans dad-1 protein.
Length = 113
Score = 122 bits (294), Expect = 1e-28
Identities = 56/93 (60%), Positives = 68/93 (73%)
Frame = -2
Query: 321 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 142
+ + V+ KL+ +Y T KLKIIDAY+ YI T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3 AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62
Query: 141 TVSCFVLGVCLRLQVNPENKNEFQGLSAERGFA 43
TV+ FVL CLR+QVN EN++EF +S ER FA
Sbjct: 63 TVTSFVLASCLRMQVNQENRSEFTAVSTERAFA 95
>AF039713-4|AAB96727.1| 113|Caenorhabditis elegans Dad (defender
against apoptoticdeath) homolog protein 1 protein.
Length = 113
Score = 122 bits (294), Expect = 1e-28
Identities = 56/93 (60%), Positives = 68/93 (73%)
Frame = -2
Query: 321 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 142
+ + V+ KL+ +Y T KLKIIDAY+ YI T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3 AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62
Query: 141 TVSCFVLGVCLRLQVNPENKNEFQGLSAERGFA 43
TV+ FVL CLR+QVN EN++EF +S ER FA
Sbjct: 63 TVTSFVLASCLRMQVNQENRSEFTAVSTERAFA 95
>Z79600-9|CAJ85761.1| 110|Caenorhabditis elegans Hypothetical
protein F59C6.14b protein.
Length = 110
Score = 32.7 bits (71), Expect = 0.10
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -2
Query: 366 LTCIIYYCKINKITMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCL 187
LT ++ Y + T+ + VI + K + IDA +F +T ++ YC
Sbjct: 36 LTAVMIYLLLVVCTLYMIWTVIQIVMPNRIEFDLKMIVFIDA-VFSAIITLMLLIAYCFF 94
Query: 186 VGTFPFNSFLSGFIS 142
G F +L GF+S
Sbjct: 95 AGGFNGKQYLDGFVS 109
>Z79600-8|CAJ85760.1| 147|Caenorhabditis elegans Hypothetical
protein F59C6.14a protein.
Length = 147
Score = 32.7 bits (71), Expect = 0.10
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -2
Query: 366 LTCIIYYCKINKITMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCL 187
LT ++ Y + T+ + VI + K + IDA +F +T ++ YC
Sbjct: 73 LTAVMIYLLLVVCTLYMIWTVIQIVMPNRIEFDLKMIVFIDA-VFSAIITLMLLIAYCFF 131
Query: 186 VGTFPFNSFLSGFIS 142
G F +L GF+S
Sbjct: 132 AGGFNGKQYLDGFVS 146
>Z69884-8|CAA93752.2| 582|Caenorhabditis elegans Hypothetical
protein F31F6.6 protein.
Length = 582
Score = 30.7 bits (66), Expect = 0.41
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = -2
Query: 357 IIYYCKINKITMSSLTA--VIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLV 184
I+ C I +T++++ + VI ++ + + L+I D F + +T F + V
Sbjct: 443 IMLICIIISVTLTNVCSNTVIASIFIPIVAELARSLEI-DPLNFMLPVTISASFAFLLPV 501
Query: 183 GTFPFNS--FLSGFISTVSCFVLGVCLRL 103
T P N+ F SG++ FV G+C+ L
Sbjct: 502 ATPP-NAIVFSSGYLKVFDMFVSGLCVTL 529
>AY090484-1|AAM11893.1| 582|Caenorhabditis elegans low-affinity
dicarboxylate transporterINDY1 protein.
Length = 582
Score = 30.7 bits (66), Expect = 0.41
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = -2
Query: 357 IIYYCKINKITMSSLTA--VIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLV 184
I+ C I +T++++ + VI ++ + + L+I D F + +T F + V
Sbjct: 443 IMLICIIISVTLTNVCSNTVIASIFIPIVAELARSLEI-DPLNFMLPVTISASFAFLLPV 501
Query: 183 GTFPFNS--FLSGFISTVSCFVLGVCLRL 103
T P N+ F SG++ FV G+C+ L
Sbjct: 502 ATPP-NAIVFSSGYLKVFDMFVSGLCVTL 529
>U40800-2|AAA81489.2| 137|Caenorhabditis elegans Hypothetical
protein D2096.5 protein.
Length = 137
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -2
Query: 258 LKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFV 124
+ ++ ++F +F + V LV TF FN FLS +STV FV
Sbjct: 6 VSLLSVFIFLLFSSEVE-----ALVTTFHFNGFLSCGLSTVDFFV 45
>U40028-10|AAA81121.3| 363|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 40 protein.
Length = 363
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Frame = -2
Query: 297 KLYQEYTTKTPKKLKIID------AYLFY--IFLTAVIQFGYCCLVG 181
K+Y E+TT T ++ II+ YLF + LT + F C++G
Sbjct: 102 KIYSEFTTNTTSEMIIIEKTLWDVPYLFIGSVMLTHYMAFSVTCMIG 148
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -2
Query: 393 ENYYYSLN*LTCIIYYCKINKITMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTA 214
EN Y LN C+++ + S+ + +L T++ K + A +F +F A
Sbjct: 406 ENSY--LNIKACVVFVAWVKVFKFISVNKTMSQL-SSTLTRSAKDIGGF-AVMFAVFFFA 461
Query: 213 VIQFGYCC 190
QFGY C
Sbjct: 462 FAQFGYLC 469
>Z81124-10|CAH60752.1| 241|Caenorhabditis elegans Hypothetical
protein T21B4.15 protein.
Length = 241
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 333 KITMSSLTAVIPKLYQEYTTKTPKKLKIIDAY 238
K S T +PKL + T+K PKK + Y
Sbjct: 202 KTVKSPTTPTVPKLVSKVTSKKPKKAPLFAKY 233
>Z68009-5|CAA92007.1| 208|Caenorhabditis elegans Hypothetical
protein R09A8.5 protein.
Length = 208
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 306 VIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVI--QFGYCC 190
V+P L+ + KT K++ +D +L +IF +I GY C
Sbjct: 123 VLPALHYDNEHKTVKQMVKLDLHLIFIFFFHLILAAIGYRC 163
>U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide
transporter protein 2 protein.
Length = 835
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 183 GTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENKN 79
G+ P +L +++T C + CL LQ NKN
Sbjct: 271 GSTPKEHWLLHYLTTHDCALDAKCLELQAEKRNKN 305
>AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical
protein Y113G7B.7 protein.
Length = 314
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 166 IKWESADKATVAELYDRSKENIEKVCINYFK 258
I + D+ +LY+RS++ IEK +N K
Sbjct: 83 ISYTDRDEGCTVKLYNRSEKYIEKTALNAMK 113
>AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity
peptide transporter protein.
Length = 796
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 183 GTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENKN 79
G+ P +L +++T C + CL LQ NKN
Sbjct: 232 GSTPKEHWLLHYLTTHDCALDAKCLELQAEKRNKN 266
>U41279-3|AAK31422.1| 210|Caenorhabditis elegans Helix loop helix
protein 26 protein.
Length = 210
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 214 GHTIRLLLPCRHFPI*FFLKWFYIYSKLL 128
G +I +PC FPI FL F +YS L+
Sbjct: 137 GKSITCTVPCLPFPILPFLPVFPVYSPLV 165
>AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical
protein ZC190.8 protein.
Length = 227
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 213 VIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENK 82
+IQ ++G F F + FI ++ F+LG CL ++ P +K
Sbjct: 12 LIQKSEYFIIGVFLI--FRTAFIFIITGFILGYCLHVKDPPSDK 53
>AC006675-2|AAK84549.1| 333|Caenorhabditis elegans Serpentine
receptor, class h protein34 protein.
Length = 333
Score = 26.6 bits (56), Expect = 6.7
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -2
Query: 354 IYYCKINKITMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTF 175
I+Y I ++ S+ + P + TK+PK + FL +I F CC+ +
Sbjct: 13 IFYNTIKRVFAFSIAIIFPFTHYCVLTKSPKS---------FGFLKWIIYFHCCCVTCEW 63
Query: 174 PFNSFL 157
N+FL
Sbjct: 64 LNNAFL 69
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 240 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 136
YLF + L G C++ F +SF + FIST+
Sbjct: 7 YLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTI 41
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 240 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 136
YLF + L G C++ F +SF + FIST+
Sbjct: 7 YLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTI 41
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 240 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 136
YLF + L G C++ F +SF + FIST+
Sbjct: 7 YLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTI 41
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,658,762
Number of Sequences: 27780
Number of extensions: 173721
Number of successful extensions: 494
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -