Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_A17
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    29   0.74 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.9  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    25   9.1  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   9.1  

>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 177 KIRKRCACNLVYVNEVIILFRCVV 106
           K RK C+ N VY NEV +LF  V+
Sbjct: 90  KCRKTCSSNKVYSNEVPLLFVFVI 113


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 93  KKTTILHIEKELSLHSRTPSCTRSVF 170
           K+  +LH E+ LS  + +PS +RS F
Sbjct: 13  KRHPLLHSERNLSRRAVSPSISRSFF 38


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 545 LHVXLPQPRRRHVSLTVRRLHTSLAQRSLQPKP 447
           LH+ +P  R R V  +++      A  S QPKP
Sbjct: 7   LHLKVPTERFREVLSSLKEKQNFTASPSSQPKP 39


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 117 RCVVLWSSSFFILQLIKVIGNAVYKRCD 34
           R +V+ +  F++L L K+I    +K+CD
Sbjct: 5   RFLVIIAFCFYVLYLEKIIHTRPHKKCD 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,187
Number of Sequences: 5004
Number of extensions: 51141
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)