Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_A17
         (632 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL833088-1|CAD89931.1|  180|Homo sapiens hypothetical protein pr...    31   3.4  
AJ298319-1|CAC83676.1|  372|Homo sapiens mucin 5 protein.              30   7.8  

>AL833088-1|CAD89931.1|  180|Homo sapiens hypothetical protein
           protein.
          Length = 180

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 549 MPTCVSTAAPTSPCIADCTP-TPYFSRSTVASTQTHSLFGRG*NMK*RKRMVSSSYPYST 373
           +P C++   P SPC    TP +  F R     T +HS      +++ R R V    PY  
Sbjct: 78  LPVCMAHLCPASPCYFGATPGSGKFCR---LITYSHSSPQLAASLRHRGREVGKDLPYPG 134

Query: 372 LC 367
           LC
Sbjct: 135 LC 136


>AJ298319-1|CAC83676.1|  372|Homo sapiens mucin 5 protein.
          Length = 372

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 555 SPMPTCVSTAAPTSPCIA--DCTPTPYFSRSTVASTQTHSLFGRG 427
           SP+PT  +T+APT+   +    TP+P  + ST ++  T +  G G
Sbjct: 125 SPVPTTSTTSAPTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSGPG 169


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,989,743
Number of Sequences: 237096
Number of extensions: 1717323
Number of successful extensions: 3036
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3034
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)