Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_A16
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1008 - 29644352-29645297,29645381-29645769                       28   5.2  
09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632...    28   6.8  
01_06_0746 - 31636024-31641396                                         27   9.0  
01_05_0014 - 17162664-17163500                                         27   9.0  

>03_05_1008 - 29644352-29645297,29645381-29645769
          Length = 444

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 77  WRITNVKRLTFLCRAWGANV 18
           WR  NVKRL  L   WG +V
Sbjct: 221 WRAANVKRLVTLSAPWGGSV 240


>09_02_0253 -
           6319198-6319240,6319364-6319552,6319650-6319995,
           6320811-6320893,6320977-6321074,6321384-6321461,
           6321891-6322000,6322083-6322180,6323199-6323296,
           6323403-6323463,6323688-6323831,6324103-6324206,
           6324634-6324787,6324860-6324879,6324967-6325029,
           6326521-6326632,6326711-6326796,6326872-6326899,
           6327242-6327293,6329034-6329250
          Length = 727

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/58 (18%), Positives = 25/58 (43%)
 Frame = +1

Query: 325 LVKHYMFLTFLKGFWQYFISLIHI*NNLMTVMTNRQIIRCYFSSSIEMNEHQLTPILH 498
           ++KHY F        ++  +  H+ ++L        +  C +  ++   EH+  P+ H
Sbjct: 348 VMKHYTFSNLSNNSQRFVSAFFHLLSSLAETFVAVNVFSCAYLVNMSRPEHRRIPLKH 405


>01_06_0746 - 31636024-31641396
          Length = 1790

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
 Frame = +1

Query: 31   QALHKKVSLLTLVILQSTYMRKKFNKI-LFTSMLGLLPTSFVLI-ILNFVVSCVYLCVLG 204
            + +   V +L +++L       KF  I +FTS+L  +PT + LI I   +   +   V+ 
Sbjct: 1669 RVIQSGVIILAVLVLIIFLKFTKFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVW 1728

Query: 205  AFIV*IS*IAKKYIFL*RMFIVKPLLM*VGLPWETQLSANLVKHYMF 345
            A +V    +A+ Y  L  +F++ P+     LP   ++   ++ +  F
Sbjct: 1729 ASVV---SVARLYEILLGVFVMAPVAFFSWLPGFQEMQTRVLFNEAF 1772


>01_05_0014 - 17162664-17163500
          Length = 278

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 209 NAPRTHKYTQETTKFNMIKTKLVGNSPS 126
           N PR H   +  +  ++IKTK+ G+SP+
Sbjct: 70  NPPRPHSAARSLSPRHVIKTKIRGDSPA 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,165
Number of Sequences: 37544
Number of extensions: 272010
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)