Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_A16
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110477-4|CAB54328.1| 309|Caenorhabditis elegans Hypothetical ... 28 4.6
Z68134-4|CAA92224.1| 567|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical p... 27 8.1
Z81486-12|CAC42272.1| 585|Caenorhabditis elegans Hypothetical p... 27 8.1
U58748-5|AAP31419.1| 285|Caenorhabditis elegans Hypothetical pr... 27 8.1
U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical pr... 27 8.1
AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic ac... 27 8.1
AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical ... 27 8.1
AL034391-2|CAA22301.2| 585|Caenorhabditis elegans Hypothetical ... 27 8.1
AF139093-1|AAD48771.1| 585|Caenorhabditis elegans muscarinic ac... 27 8.1
>AL110477-4|CAB54328.1| 309|Caenorhabditis elegans Hypothetical
protein Y113G7B.6 protein.
Length = 309
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 213 SLNFLNCQEIYFPVKNVYCETSFNVSWASMGNTIKCKLSETLYVSHFFEG--ILAVFYFT 386
S++ ++ + FP+++++ + F V+W + K+ + + S FE ILA +
Sbjct: 208 SISIISKKHFNFPIEHLFHLSRFQVNWMRLSVDDAIKIRDVIMKSSHFESGMILAEYEIE 267
Query: 387 NSYLK*FD 410
++ FD
Sbjct: 268 PEVVRVFD 275
>Z68134-4|CAA92224.1| 567|Caenorhabditis elegans Hypothetical
protein T27A8.5 protein.
Length = 567
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 137 NSPSIEVNNILLNFFLM*VDWRITNVKRLTFLCR 36
++PS + N L+ F+ ++ I VK +TF CR
Sbjct: 151 DTPSTALWNALIPMFMTDIEHHIGRVKNITFSCR 184
>Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 168 LCCFLCIFVCSWGIYSLNFLNCQEIYFP--VKNVYCETSF 281
L LC F+ +W Y N + C E +FP V NV S+
Sbjct: 526 LSAILCAFIATWTPY--NLIVCWEAFFPNTVPNVLWTFSY 563
>Z81486-12|CAC42272.1| 585|Caenorhabditis elegans Hypothetical
protein Y40H4A.1a protein.
Length = 585
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 168 LCCFLCIFVCSWGIYSLNFLNCQEIYFP--VKNVYCETSF 281
L LC F+ +W Y N + C E +FP V NV S+
Sbjct: 500 LSAILCAFIATWTPY--NLIVCWEAFFPNTVPNVLWTFSY 537
>U58748-5|AAP31419.1| 285|Caenorhabditis elegans Hypothetical
protein ZK180.3b protein.
Length = 285
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 34 ALHKKVSLLTLV--ILQSTYMRKKFNKILFTSMLGLLPTSFVLIILNFVVSCVYLCVLGA 207
+L+ L+T + I + M N+ +FT L TS + +I+N+V+ CVY+ G
Sbjct: 212 SLYSGYILVTAINGITEGFAMASMDNRQIFTHGKFLFVTSIIHLIINYVL-CVYMNSAG- 269
Query: 208 FIV 216
FIV
Sbjct: 270 FIV 272
>U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical
protein ZK180.3a protein.
Length = 522
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 34 ALHKKVSLLTLV--ILQSTYMRKKFNKILFTSMLGLLPTSFVLIILNFVVSCVYLCVLGA 207
+L+ L+T + I + M N+ +FT L TS + +I+N+V+ CVY+ G
Sbjct: 360 SLYSGYILVTAINGITEGFAMASMDNRQIFTHGKFLFVTSIIHLIINYVL-CVYMNSAG- 417
Query: 208 FIV 216
FIV
Sbjct: 418 FIV 420
>AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic
acetylcholine receptorlarge isoform protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 168 LCCFLCIFVCSWGIYSLNFLNCQEIYFP--VKNVYCETSF 281
L LC F+ +W Y N + C E +FP V NV S+
Sbjct: 526 LSAILCAFIATWTPY--NLIVCWEAFFPNTVPNVLWTFSY 563
>AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 168 LCCFLCIFVCSWGIYSLNFLNCQEIYFP--VKNVYCETSF 281
L LC F+ +W Y N + C E +FP V NV S+
Sbjct: 526 LSAILCAFIATWTPY--NLIVCWEAFFPNTVPNVLWTFSY 563
>AL034391-2|CAA22301.2| 585|Caenorhabditis elegans Hypothetical
protein Y40H4A.1a protein.
Length = 585
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 168 LCCFLCIFVCSWGIYSLNFLNCQEIYFP--VKNVYCETSF 281
L LC F+ +W Y N + C E +FP V NV S+
Sbjct: 500 LSAILCAFIATWTPY--NLIVCWEAFFPNTVPNVLWTFSY 537
>AF139093-1|AAD48771.1| 585|Caenorhabditis elegans muscarinic
acetylcholine receptor protein.
Length = 585
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 168 LCCFLCIFVCSWGIYSLNFLNCQEIYFP--VKNVYCETSF 281
L LC F+ +W Y N + C E +FP V NV S+
Sbjct: 500 LSAILCAFIATWTPY--NLIVCWEAFFPNTVPNVLWTFSY 537
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,706
Number of Sequences: 27780
Number of extensions: 296908
Number of successful extensions: 670
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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