Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_A15
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 141 4e-34
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 141 5e-34
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 133 1e-31
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 130 1e-30
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 51 8e-07
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 34 0.093
11_01_0104 - 781471-781888,781994-782101,782195-782511 34 0.12
12_01_0104 - 816185-816602,816710-816817,816910-817037 31 0.65
09_02_0390 + 8465652-8466059 31 0.86
10_01_0204 + 2199778-2200835,2201212-2201311 31 1.1
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 30 2.0
11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084 29 3.5
03_06_0343 + 33274329-33274981,33275197-33276121 29 3.5
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 29 3.5
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891... 29 3.5
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085... 29 4.6
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 28 6.1
03_02_0174 + 6142472-6142849 28 8.0
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 28 8.0
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 141 bits (342), Expect = 4e-34
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
Frame = -1
Query: 482 RAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSH 306
+A+AVL S+E ++G I F+Q DG V G ++GL PG +GFHVH GD + GC+STG H
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62
Query: 305 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGXIGRAVVLHEKA 126
FNP K+HG P D NRH GDLGN+ + + +++ D QI L+G H IGRAVV+H
Sbjct: 63 FNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADP 122
Query: 125 DDYGK 111
DD GK
Sbjct: 123 DDLGK 127
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 141 bits (341), Expect = 5e-34
Identities = 65/128 (50%), Positives = 84/128 (65%), Gaps = 1/128 (0%)
Frame = -1
Query: 491 TPSRAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVST 315
T +A+ VL S+E ++G I F Q DG V G ++GL PG +GFH+H GD + GC+ST
Sbjct: 118 TMVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMST 177
Query: 314 GSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGXIGRAVVLH 135
G H+NP K+HG P D RH GDLGNV E+ + I +VD QI L+GP+ IGRAVV+H
Sbjct: 178 GPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVH 237
Query: 134 EKADDYGK 111
DD GK
Sbjct: 238 ADPDDLGK 245
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 133 bits (322), Expect = 1e-31
Identities = 62/125 (49%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
Frame = -1
Query: 482 RAIAVLS-TETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSH 306
+A+AVL T + G +T TQ G V +TGL PG +GFH+HE GD + GC+STG H
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPH 112
Query: 305 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGXIGRAVVLHEKA 126
FNP + HG P D RH GDLGN+V + + +VD QI LSGP+ +GRA V+HE
Sbjct: 113 FNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELE 172
Query: 125 DDYGK 111
DD GK
Sbjct: 173 DDLGK 177
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 130 bits (314), Expect = 1e-30
Identities = 58/115 (50%), Positives = 76/115 (66%)
Frame = -1
Query: 434 FTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRH 255
F G V+G +TGL PG +GFH+H GD + GC STG HFNP +K HG P+D RH
Sbjct: 30 FQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERH 89
Query: 254 VGDLGNVVFDENHYSRIDLVDDQISLSGPHGXIGRAVVLHEKADDYGKSDXPDXQ 90
VGDLGN+V +++ + I + D QISLSGPH +GRAVV+H +DD G+ + Q
Sbjct: 90 VGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRGQKSNCQ 144
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 51.2 bits (117), Expect = 8e-07
Identities = 35/121 (28%), Positives = 59/121 (48%)
Frame = -1
Query: 485 SRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSH 306
S A+A I G + QV V+ +GL PG++G+ ++E GDL+ G STG
Sbjct: 165 SAAVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKV 224
Query: 305 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGXIGRAVVLHEKA 126
+NP D+ N+ +GDLG + E ++ +++ + IGR++ L+
Sbjct: 225 YNP--SDYRS----NKPLGDLGTLEAGEKGEAQFSASKEKLKVV---DLIGRSIALYATE 275
Query: 125 D 123
D
Sbjct: 276 D 276
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 34.3 bits (75), Expect = 0.093
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 410 VHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTG 312
+ V+ ++GL P +GFHVH G + GC+ G
Sbjct: 37 ITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>11_01_0104 - 781471-781888,781994-782101,782195-782511
Length = 280
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -3
Query: 543 TNIPGCDRSGDGSSRLHHAVSRHCR-SIHRND*RQHHVHPGSRW-EGPRSGGYHWAASG* 370
TN+ G R GD S +H + + S+ + R++ H GS + P + G+ W G
Sbjct: 75 TNLVGGKRKGDKHSMDNHNLEEEAKESVSKR--RKNAEHTGSTVAQAPHNDGHQWRKYGQ 132
Query: 369 IWLSRA 352
W+SRA
Sbjct: 133 KWISRA 138
>12_01_0104 - 816185-816602,816710-816817,816910-817037
Length = 217
Score = 31.5 bits (68), Expect = 0.65
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 543 TNIPGCDRSGDGSSRLHHAVSRHCR-SIHRND*RQHHVHPGSRW-EGPRSGGYHWAASG* 370
TN+ G R GD +H + + S+ + R++ H GS + P + G+ W G
Sbjct: 12 TNLVGGKRKGDKHIMDNHNLEEEAKESVSKR--RKNAEHTGSTVAQAPHNDGHQWRKYGQ 69
Query: 369 IWLSRA 352
W+SRA
Sbjct: 70 KWISRA 75
>09_02_0390 + 8465652-8466059
Length = 135
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 338 GRLSHARESHIHPEAAQ*YPPERGPSHLEPG 430
GRL H SH HP PP G S PG
Sbjct: 39 GRLCHRLRSHNHPSLLPTLPPRAGTSSTPPG 69
>10_01_0204 + 2199778-2200835,2201212-2201311
Length = 385
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 258 SRRRPWK--RGL*REPLQQDRPGRRPDLAIGSARXHRQGGGAPR 133
+R+RP + RG REP+ + A+G+AR R GGGA R
Sbjct: 27 TRKRPSRTSRGSQREPVGGAGRKEKAKSAVGAARAERWGGGAER 70
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 458 LWIERQWRETAW*SRDEPSP 517
LW ++W TAW S D+PSP
Sbjct: 173 LWSGQEWFITAWRSADDPSP 192
>11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084
Length = 197
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 285 PRSSERCQPSRRRPWKRGL*REPLQQDRPGRRPDLAIGSARXHRQGG 145
PR S R + RRPW RG R L+ G RPD + + GG
Sbjct: 90 PRISGRQRGGGRRPWDRGRRRRRLEH---GGRPDPVVPNHMETGSGG 133
>03_06_0343 + 33274329-33274981,33275197-33276121
Length = 525
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 535 SWLRSLWRRLITASPRRLAPLPFYPQKRLEATSRSPRFKMGRSTFRGV 392
S++ SLW ++ P+ L P+K+ E FK G+ R V
Sbjct: 233 SYMCSLWTEVVFKHPKTFETLAMDPEKKREIIDDLDMFKNGKEQHRRV 280
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Frame = -3
Query: 255 RRRPWKRGL*REPLQQDRP-----GRRPDLAIGSARXHRQGGG 142
RRRPW RG R + P GRRP G H + GG
Sbjct: 47 RRRPWSRGGGRAAPESTPPAKYARGRRPRRGSGGHAPHPESGG 89
>02_04_0115 -
19888252-19888406,19888507-19888573,19888867-19889101,
19889179-19889255,19889350-19889415,19889517-19889565,
19889651-19889701,19889799-19889851,19889973-19890024,
19890126-19890214,19890308-19890393,19890603-19890659,
19890742-19890919,19891852-19891908,19892209-19892439
Length = 500
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -1
Query: 341 DLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHG 162
DL GG +G P+H+ N N VG N V +N+ + S S G
Sbjct: 357 DLGGGATPSGHANVPKHQPTEVFNTTNAGVGQCSNSVAVDNNIQHSQTIPQDPSASHDFG 416
Query: 161 XIGRAV 144
+ R +
Sbjct: 417 GMTRII 422
>04_04_1331 -
32706043-32707248,32707411-32707652,32707737-32708562,
32708640-32708863,32708946-32709262,32709381-32709443,
32709465-32709640,32710609-32710985,32711416-32711470,
32711614-32711913
Length = 1261
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 558 KNAASTNIPGCDRSGDGSSRLHHAVSRH 475
+ AA+ + GCD +G+G R AV+ H
Sbjct: 15 EKAANGGVNGCDAAGEGKKRADQAVAFH 42
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 458 LWIERQWRETAW*SRDEPSP 517
LW +W T+W S D+PSP
Sbjct: 172 LWTGAEWDLTSWRSPDDPSP 191
>03_02_0174 + 6142472-6142849
Length = 125
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -3
Query: 255 RRRPWKRGL*REPLQ-----QDRPGRRPDLAIGSARXHRQGGGA 139
RRRPW+RG R ++ D RRP G AR +GGGA
Sbjct: 53 RRRPWRRGGARGRVEVAAVLADERRRRP-WRRGGARGQGRGGGA 95
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -2
Query: 532 WL--RSLWRRLITASPRRL---APLPFYPQKRLEATSRSPRFKMGRSTFRGVSLGCLR 374
WL R + RR+ A L APL Y + LE + S R +GR F V G LR
Sbjct: 461 WLNQRMVRRRVALADAEALDEEAPLRSYSYEELEHATYSFRHPLGRGAFGTVFKGTLR 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,624,530
Number of Sequences: 37544
Number of extensions: 404257
Number of successful extensions: 1017
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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