Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_A13
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 97 8e-22
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.19
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.3
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 2.3
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 26 2.3
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 2.3
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 3.0
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch... 25 4.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 4.0
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.3
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 24 7.0
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 9.3
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 24 9.3
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 9.3
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 24 9.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 24 9.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 9.3
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 97.1 bits (231), Expect = 8e-22
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = -2
Query: 261 RFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTF 82
RFPN NQT+HC+QSY+D+ RC K +GE + PC F Y+SLCP EWV++WD QR GTF
Sbjct: 20 RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79
Query: 81 AGRI 70
I
Sbjct: 80 PAPI 83
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.19
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -3
Query: 233 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 75
T++ V TST A NTS + S S P++ ST TS P S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405
Score = 28.7 bits (61), Expect = 0.33
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -3
Query: 233 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 75
T++ V TST A NTS S S P++ ST TS P S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169
Score = 28.7 bits (61), Expect = 0.33
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -3
Query: 233 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 75
T++ V TST A NTS S S P++ ST TS P S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813
Score = 26.6 bits (56), Expect = 1.3
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 233 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 75
T++ V TST NTS S S P++ ST TS P S V
Sbjct: 1177 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1229
Score = 26.6 bits (56), Expect = 1.3
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 233 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 75
T++ V TST NTS S S P++ ST TS P S V
Sbjct: 1489 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1541
Score = 25.0 bits (52), Expect = 4.0
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -3
Query: 233 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 75
T++ V TST NTS S S P++ ST +S P S V
Sbjct: 1357 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 1409
Score = 25.0 bits (52), Expect = 4.0
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -3
Query: 233 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 75
T++ V TST NTS S S P++ ST +S P S V
Sbjct: 2197 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 2249
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 2.3
Identities = 20/74 (27%), Positives = 39/74 (52%)
Frame = -3
Query: 302 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMS 123
S+ P ++ +S+ S + T + + +S+ + ++ +S +TIS + S+P S
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS-SSPTSSSSTIS---SSSSSPSS 352
Query: 122 GSTSGTTSAPKAPS 81
S S TTS+ K+ S
Sbjct: 353 SSFSSTTSSSKSSS 366
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 300 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRG-EKYEPCYYFKRVY 145
++ ++ +++ DP P + + +C +Y + +K+RG +KY+P + +Y
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGPLTKKLRGPKKYKPSHSSWDIY 235
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 292 GRFDHLRHIAYYYLAVSWIYFNSIGR 369
G++D RH Y + W YF S+ R
Sbjct: 95 GKYDFSRHCTDYGHSYEWPYFRSLRR 120
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.8 bits (54), Expect = 2.3
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = -3
Query: 275 HLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISREC-TGLSAPMSG--STSGT 105
H ST + T T T T T T R A NTS+ + S G SA S T
Sbjct: 141 HSSTTANRTTSTPTTTTART-TRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAG 199
Query: 104 TSAPKAPSPV 75
T A SPV
Sbjct: 200 TGASHRSSPV 209
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 3.0
Identities = 24/65 (36%), Positives = 32/65 (49%)
Frame = -3
Query: 290 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTS 111
PT KQ L+ H +RR T+ + T+T + A NT+ T S SA S STS
Sbjct: 486 PTGKQ-LALH----PLRRETSI-LDSTNTTSTN--ATNTTTTTSSSSTASSSASASSSTS 537
Query: 110 GTTSA 96
T+ A
Sbjct: 538 ATSGA 542
>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 186
Score = 25.0 bits (52), Expect = 4.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 190 NFLATVEVHVTLVAVPRLILVREPWVERCCFEVGGRFDHLRHIAYYYLAVSWI 348
N+ +H+ L+A RLI P V R E+ +L ++A ++ W+
Sbjct: 40 NYKGAWVIHIVLIAALRLIFHAIPSVSR---ELAWTLTNLTYMAGSFIMFHWV 89
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 4.0
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = -3
Query: 299 NRPPTSKQHL---STHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAP 129
NRPP +T + T K T + ++ + TS A+ + SAP
Sbjct: 1024 NRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083
Query: 128 MSGSTSGTTSAPKAPSP 78
++ + S ++ P P P
Sbjct: 1084 VANNVSKPSAVPPPPPP 1100
>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 72
Score = 24.6 bits (51), Expect = 5.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 105 CPTCRPTHWGRETCTL 152
CPT PT W +CT+
Sbjct: 3 CPTHGPTTWNPHSCTV 18
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = -3
Query: 224 KVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 81
+ T +++++ + +TS AT++ +S+ + SAP+A S
Sbjct: 303 RTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPSPTPQSAPRAQS 350
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 290 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSH 168
P+SKQ + H K+R G T ++ NT+H
Sbjct: 81 PSSKQDIELHKLHEKLRNGQITTKEYSEKSKELGGDLNTTH 121
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 9.3
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -2
Query: 369 PADAIEINPRNG*IIISNMPEMIKSPADLKTAPFDPRFPNQNQTRHCYQ 223
PA ++ I+P +S+ P + AD+K+ P P N H Y+
Sbjct: 89 PAASLSISPTKS-AAVSSEPNV---EADVKSLSSTPAAPQLNSPSHSYE 133
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 137 SAPMSGSTSGTTSAPKAPSPVGFRS 63
+AP + T TT P A SP+ ++S
Sbjct: 433 NAPAAPGTMYTTPLPTANSPIAYQS 457
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 284 SKQHLSTH-GSLT-KIRRGTATKVTWTST 204
SK+ + H GS++ + RRG T+ WT+T
Sbjct: 1192 SKELVELHNGSMSCQSRRGVGTRFMWTAT 1220
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 23.8 bits (49), Expect = 9.3
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 302 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMS 123
S+RP ++ +ST + + + ++ + TST + TSH + S SA S
Sbjct: 580 SSRP---EETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLS-SSSVHSSSAHSS 635
Query: 122 GSTSGTTSAP 93
S S + S P
Sbjct: 636 SSRSSSMSLP 645
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.8 bits (49), Expect = 9.3
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -3
Query: 290 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTS 111
P S + +T S + + T TS + + N++ AT + SA + STS
Sbjct: 342 PLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTS 401
Query: 110 GTTSAP 93
+++AP
Sbjct: 402 VSSTAP 407
Score = 23.8 bits (49), Expect = 9.3
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -3
Query: 290 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTS 111
P S + +T S + + T TS + + N++ AT + SA + STS
Sbjct: 456 PLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTS 515
Query: 110 GTTSAP 93
+++AP
Sbjct: 516 VSSTAP 521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,061
Number of Sequences: 5004
Number of extensions: 30961
Number of successful extensions: 108
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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