Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_A11
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.0  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    24   8.2  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   8.2  

>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 48  PKAGIHPRLAT*VTA*VTPSGPMYAN-SPRTS 140
           PKA + PR+   +T   + + P+YAN SP++S
Sbjct: 664 PKASLSPRVHKSMTYSPSEASPLYANKSPKSS 695


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 290 WGSDSYGDEESDNEE 334
           WG +   +EESDNE+
Sbjct: 236 WGDERSDEEESDNEQ 250


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 235 VEGYNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGV 98
           V+   TGY     +KA E   ++  GT   A+    +FAY G DG+
Sbjct: 835 VKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAY-GEDGL 879


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,189,867
Number of Sequences: 5004
Number of extensions: 16604
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)