Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_A07
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    28   2.0  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   6.0  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.9  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 381 TNLKQTKRIGPTGDISKEKQNCLFLYNSKHFHIYSPFKPSLDFH 512
           T     KR+  T + S  K+N    +N+   +   P KP LD+H
Sbjct: 46  TRKSPLKRVSITSESSFYKENTFAHHNTTGSNSVGPKKPFLDYH 89


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 112 HVKXIKQT*QXKSSINSINRPFNLKLYYSQALVRPNSRLRKHSASI 249
           H+K   QT        S N   N  L+Y +   RP+ R+ K +  I
Sbjct: 612 HLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGI 657


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 443 ILFFL*YVPRRTNSFCLF 390
           ++FFL  VP+ T SFC+F
Sbjct: 261 LIFFLNLVPKPTVSFCVF 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,157
Number of Sequences: 5004
Number of extensions: 67168
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)