Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P23
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)                31   1.1  
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)           29   4.2  
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)
          Length = 368

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 168 KGAAHVDSAGIIVAISEQACKIQPNMKPPTVCLETDKKQC 287
           K A H D + I+V   E+ACK+ P +     C ++ +  C
Sbjct: 224 KCARHADESSIVVRDREEACKLTPTLLYVGCCEDSREMMC 263


>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
          Length = 355

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 148 CGSAIRQPLTLGID---MISSTTLSRSFSIFIKQ 56
           CG+ I QPLTL I    ++  TT+S+   +FI Q
Sbjct: 154 CGTTILQPLTLFITQAVLLCGTTISQPLPLFITQ 187


>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 69  MENDLDKVVEEIMSMPNVNGCLIADPQGLCLASKGAAHVDSAGI-IVAISEQ 221
           ++ND  K+ + + + P     L+A+P+G  +  +GA + D + + +V I+ Q
Sbjct: 455 LDNDTSKLQKNLPNGPPAVCILVAEPRGFFMTLEGAVNNDVSLVRVVKINSQ 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,921,034
Number of Sequences: 59808
Number of extensions: 405838
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)