Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_P22
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 30 0.28
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 29 0.86
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 3.5
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.5
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 27 3.5
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 3.5
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 26 4.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 6.0
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 8.0
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce... 25 8.0
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 30.3 bits (65), Expect = 0.28
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 135 SSFEIGXPLYPAHANVPADSSYDFIIVGGGSAGCVLANRLTEVANWTVLLIEAG 296
+ EI LY A A+ + YD ++GGG G V A R ++ T+ + + G
Sbjct: 27 AQIEISKRLYSAKAS--GNGEYDLCVIGGGPGGYVAAIRGAQLGLKTICVEKRG 78
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 28.7 bits (61), Expect = 0.86
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 183 PADSSYDFIIVGGGSAGCVLANRLTEVANWTVLLIEA 293
P +D++++GGGS G A R + V LIEA
Sbjct: 3 PISKVFDYLVIGGGSGGLASARRAAK-HGAKVALIEA 38
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +3
Query: 480 VRGNRADYDNWAENGNEGWD----WNTVIQYFKKSERLD 584
V GN AD +W +G WD + V+ + KK + LD
Sbjct: 110 VEGNAADPFSWIPDGKNVWDSPPKYIRVLSHNKKEKSLD 148
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 309 SIANSPGYSLITSTLLPNWGYFG 377
SIANSP SL+T L P + G
Sbjct: 390 SIANSPSVSLLTKVLHPKYHLIG 412
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +3
Query: 534 WDWNTVIQYFKKSERLDDNHILSSESADLHGNKGYLGVTRPXWKSFDEGLFD 689
++ V F + ++H+L + A+L K Y + WK E L D
Sbjct: 333 YEKKVVFMSFNRWHANYESHVLDLQKAELFSQKAYYSIALHKWKLRIEELSD 384
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 189 DSSYDFIIVGGGSAGCVLANRLTEVANWTVLLIEAGD 299
D YD I++G G CVL+ L V VL I+ D
Sbjct: 2 DEEYDVIVLGTGLTECVLSG-LLSVDGKKVLHIDRND 37
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 249 RLTEVANWTVLLIEAGDDPPSIANSPGYSLITSTL 353
+L E+ N+ ++E DDPP I +P + TSTL
Sbjct: 794 KLEEIENY---IMENKDDPPEIYAAPVFKNKTSTL 825
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 173 RQRASRFELRLHNRGRRISWLRT 241
++RA + ELR+H +RIS +R+
Sbjct: 215 KERAEKIELRVHESLKRISCIRS 237
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -1
Query: 397 LEKSSFTPKYPQFGSKVEVISE*PGLLAMLGGSSPASINNTVQLATSVSLLASTQ----P 230
LEK+SFT +P ++++V S + A L S ++N+T+ VS T P
Sbjct: 51 LEKASFTKVFPPSCTQLDVFST---ICAPLIADSLVNMNDTLLFTLGVSGAGKTYTLFGP 107
Query: 229 ADPP 218
+D P
Sbjct: 108 SDRP 111
>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 570 SERLDD--NHILSSESADLHGNKGYLGVTRPXWKSFDEGLFDAFK 698
S +L D N ++ +E+ +L G +R +KS +GL DAF+
Sbjct: 152 SPKLTDLQNQLVRTEAENLVGEMQLDNTSREVFKSSFQGLMDAFQ 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,323
Number of Sequences: 5004
Number of extensions: 47724
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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