Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P22
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   1e-18
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)                 33   0.17 
SB_22909| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)           31   1.2  
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)               31   1.2  
SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)                   30   2.1  
SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41)        29   2.8  
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             29   2.8  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_12647| Best HMM Match : NNMT_PNMT_TEMT (HMM E-Value=5.3e-10)        29   4.9  
SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_45400| Best HMM Match : MAM (HMM E-Value=0)                         28   6.4  
SB_14360| Best HMM Match : TFIIS_C (HMM E-Value=0.032)                 28   6.4  
SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033)                  28   8.5  

>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 3/131 (2%)
 Frame = +3

Query: 192 SSYDFIIVGGGSAGCVLANRLTEVANWTVLLIEAGDDPPSIANSPGYSLITSTLLPNWGY 371
           S +D++I G GSAGCVLANRL+   +  VLL+EAG    +       +LI +     + +
Sbjct: 162 SEHDYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNW 221

Query: 372 FGVNDDFSSQGQKFKSIRHT---RGKMLGGSSSLNSMFYVRGNRADYDNWAENGNEGWDW 542
           +     + +  QK  + R     RG++ GGSSSLN+M Y+RG+  DYD W   G +GW +
Sbjct: 222 Y-----YHTAPQKHMNNRVMYCPRGRVWGGSSSLNAMVYIRGHAYDYDRWEREGAQGWSY 276

Query: 543 NTVIQYFKKSE 575
              + YF+KS+
Sbjct: 277 ADCLPYFRKSQ 287


>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 26/56 (46%), Positives = 34/56 (60%)
 Frame = +3

Query: 198 YDFIIVGGGSAGCVLANRLTEVANWTVLLIEAGDDPPSIANSPGYSLITSTLLPNW 365
           YDFII GGG+AGC+LANRLT      VL++EAG +  S+  S         + P+W
Sbjct: 11  YDFIIAGGGTAGCILANRLTADGRHRVLMLEAGHEARSMWISIPAGFSKLLVNPDW 66


>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
          Length = 1423

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +3

Query: 276  VLLIEAGDDPPSIANSPGYSLITSTLLPNWGYFGVNDDFSSQGQKFKSIRHTRGKMLG 449
            VL+ +A   PP  A   GYS  T +LLPN  Y  +ND +  +    K        +LG
Sbjct: 1321 VLIGQADKIPPVCAVLAGYSRATISLLPNAAY--INDGYDDENNDVKQFGQLLAVLLG 1376


>SB_22909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 210 IVGGGSAGCVLANRLTEVANWTVLLIE 290
           ++GGG  GC  A +L +  N+TV L+E
Sbjct: 21  VIGGGIGGCCSALQLAKTGNYTVFLLE 47


>SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)
          Length = 410

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 192 SSYDFIIVGGGSAGCVLANRLTEVANWTVL 281
           + ++ IIVGGG AG  LA +L +  N T++
Sbjct: 45  NDFNVIIVGGGYAGITLAGKLDDYCNVTLI 74


>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
          Length = 394

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 186 ADSSYDFIIVGGGSAGCVLANRLTEVANWTVLLIEA 293
           A  +YD++++GGGS G   A R  E     V++  A
Sbjct: 47  AVKAYDYVVIGGGSGGIASARRAAEFGVKAVVIEHA 82


>SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 477 YVRGNRADYDNWAENGNEGWDWNTVIQY 560
           YV+ +R  Y  W   GN  WDW    QY
Sbjct: 64  YVQAHRRAYLAWYYYGNGNWDWELDNQY 91


>SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)
          Length = 836

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 171 HANVPADSSYDFIIVGGGSAGCVLANRLTEVANWTVLLIEAGD 299
           HAN   +   D I++GGG +G   A  L +      L++EA D
Sbjct: 539 HANHTEELRADIIVIGGGISGLCAAKLLQQGHGVDTLVLEARD 581


>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 174 ANVPADSSYDFIIVGGGSAGCVLANRLTEVANWTVLLIE 290
           ++VPA++  D +++GGGS G      LT++    V+L+E
Sbjct: 103 SSVPAEA--DVVVIGGGSVGTSTLYHLTKMGVKNVILLE 139


>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2324

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 201  DFIIVGGGSAGCVLANRLTEVANW-TVLLIEAGD 299
            D II+G G +G + AN LTE   +  VL++EA D
Sbjct: 2108 DVIIIGAGVSGLIAANVLTEQDQYIKVLVLEACD 2141


>SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41)
          Length = 264

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 189 DSSYDFIIVGGGSAGCVLANRLTE 260
           +S YD IIVGGG+AG   A  + E
Sbjct: 2   NSKYDIIIVGGGAAGFFTAINIAE 25


>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 186 ADSSYDFIIVGGGSAGCVLANRLTEVANW 272
           A   YD I++GGGS G   A       NW
Sbjct: 665 ASYEYDLIVIGGGSGGLACAKNHIGSLNW 693


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 502  TTIGPKTETKAGTGIQSFSTLRKVKDSMTIIS*AVNPQTYTXTKDTSESRDRCGSLST 675
            TT+ P++    GT +   ST+ +     T+IS A  P+T   ++ T+E      S ST
Sbjct: 1248 TTVSPESTFTPGTTVSPESTVAQESTIATVISAA--PETTESSESTAEPLTTAASEST 1303


>SB_12647| Best HMM Match : NNMT_PNMT_TEMT (HMM E-Value=5.3e-10)
          Length = 325

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +3

Query: 453 SSSLNSMFYVRGNRADYDNWAENGNEGWDWNTVIQYFKKS--ERLDDNHILSSE 608
           +  L S  Y   N+     W E   +G+DW   I+Y  K+   + DD  +   E
Sbjct: 76  AKELVSADYTPSNQEAVKLWKEKDPKGFDWRPFIEYVVKNLEGKCDDQEVTQRE 129


>SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 301 SSPASINNTVQLATSVSLLASTQPADP 221
           +S  S  NTV LA+ V  LAS QPA P
Sbjct: 18  TSALSTQNTVSLASQVHHLASVQPALP 44


>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
          Length = 257

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 444 LGGSSSLNSMFYVRGNRADYDN-WAENGNEGWDW 542
           + G S++ S+     NRA     W++ GN+G DW
Sbjct: 88  MNGGSAVGSLNVYLANRASLSLVWSKTGNQGSDW 121


>SB_14360| Best HMM Match : TFIIS_C (HMM E-Value=0.032)
          Length = 299

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 308 WRVVASFYQQHSPIGDFG 255
           W+ V S+YQ  SP GD G
Sbjct: 109 WQTVKSYYQSRSPCGDSG 126


>SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033)
          Length = 324

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 186 ADSSYDFIIVGGGSAGCVLANRLTEVANWTVLLIEAGDDPPSIAN 320
           ++SS  F I  G   GCVLA  L  +  W  L+   G  PP + N
Sbjct: 105 SNSSEAFDISIGVKQGCVLAPTLFNILLWFALVAHIG-CPPKLLN 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,781,806
Number of Sequences: 59808
Number of extensions: 365451
Number of successful extensions: 1011
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)