Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P18
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   3.7  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    26   4.9  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.5  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   6.5  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   6.5  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   6.5  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   6.5  

>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 445 FPWSLMSVTAPCFLQSTCSGSFTLAGDMN 359
           +PWS   V    +L     G F LAGD N
Sbjct: 399 YPWSQPVVNITDYLSDNGDGHFVLAGDGN 427


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 537 FAPRATPGSRTDGSAVLPKLP 475
           F P   P ++T+ + +LPKLP
Sbjct: 119 FLPEGNPDAKTNWTPILPKLP 139


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 84  KEAWSAFKLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYGD 257
           K A +  K ++ +    E  D+F  +++ E  +I  K  ++  +   SYK G+ +Y +
Sbjct: 32  KIACNENKYRYEMTSTEEDIDSFFSRVFGEKNYISDKSLREQIVTHKSYKHGLKRYNE 89


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 161 LHAEIVLDLAFVVETVLQLEGTPRFLDQVKELNSTHSSHCAXQQ 30
           LH E +LD+A   E    L    R+  Q++ LNS    H +  Q
Sbjct: 578 LHREHILDMAVESERQKLLLTNKRYKAQIELLNSEIDKHRSESQ 621


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 246 CSCPACKKRGPFRTSG 199
           C+CP C+K  P  T G
Sbjct: 144 CTCPLCRKEVPHETVG 159


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 492  QHFRQSGYLVSLSEQNLIDCSEQYGN 569
            QHF + G +     QN+  C EQ  N
Sbjct: 947  QHFGKQGTIFDFHSQNMRQCREQLHN 972


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 364  MNLAPRTLPPFMYRFLLCLAVLLKPFI 284
            M++AP  L   +  F  CL ++L+P +
Sbjct: 1482 MSVAPLVLSAIIAFFFFCLGIMLRPIL 1508


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +3

Query: 357 KFISPANVKLPEQVDWRKHGAVTDIKDQGKCGSCWSFSTTGALEGQHFRQSGYLVSLS 530
           K ISP +V     V W ++  V    D   C S W   T G +   H     Y+ S+S
Sbjct: 103 KEISPYSV-----VQWIENDMVFATGDDNGCVSVWDKRTEGGIIHTHNDHIDYISSIS 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,354
Number of Sequences: 5004
Number of extensions: 45393
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)