Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P17
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   7.3  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    25   7.3  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   9.6  

>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 184 FLNRIYKYVLYACL*SIIFVIV 249
           FLNR +K  L+AC+   IF ++
Sbjct: 14  FLNRNFKKCLFACISIFIFALL 35


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 170 TYLXFFLIVYISMCSTRVCRV*FLSSYSDYNLL 268
           TYL  F  V+ + C+ + C V   ++  DY  L
Sbjct: 95  TYLNHFYDVFATFCTVKTCPVMSAAANFDYTWL 127


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 75  ETTKRKRQNEAREALEDA 22
           ++ K K+QN+++EAL DA
Sbjct: 90  DSQKEKKQNKSKEALADA 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,728
Number of Sequences: 5004
Number of extensions: 37819
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)