Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P17
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)                30   1.4  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    29   2.5  
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  28   5.7  
SB_49146| Best HMM Match : GntR (HMM E-Value=1.8e-16)                  27   7.6  

>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 176 LXFFLIVYISMCSTRVCRV*FLSSYSDYNLLILFYLF 286
           L FF+++ +++C T VC   FL +  DY  L L  L+
Sbjct: 438 LVFFILITVTICVTIVCTY-FLLNAEDYRCLQLIVLY 473


>SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)
          Length = 923

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -1

Query: 527 IYFI*KSLVLRVQHTVYNKN*KNIQELLNNRFYRSSYLFQ 408
           +Y I   L++R+ H V NK+ ++  + L NRF +S+ + Q
Sbjct: 621 LYLIVTVLLIRIFHQVMNKSFRDAYKRLFNRFRKSTRIMQ 660


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +1

Query: 34  RLSCFVLSFPFR-----RLSARGAWGVSQGXKVLFSFVHHQNASCSKPXLNI 174
           R+  F+L + +R     R   R  WGV  G +     +HH+  S S P  N+
Sbjct: 20  RVPVFLLHYTYRGFVKMRSDLRRLWGVISGKRYAEEPIHHRKRSRSLPRTNV 71


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 534  LSNLFHLKIFSTTRTTHRIQQKLKK-YTGVAK*SVLP 427
            LSN   L+I S T+  +R+Q  LKK + G+AK    P
Sbjct: 1073 LSNDEMLEILSETKDPYRVQPHLKKCFEGIAKLEFTP 1109


>SB_49146| Best HMM Match : GntR (HMM E-Value=1.8e-16)
          Length = 410

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   PAARAICVFQRLSCFVLSFPFRRLSARG 87
           P+ RA+C  Q +S   +   ++RL ARG
Sbjct: 34  PSIRALCALQNVSKATVMHAYQRLEARG 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,420,641
Number of Sequences: 59808
Number of extensions: 258787
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)