Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P17
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm recep...    29   2.2  
AC024759-3|AAK68433.1|  355|Caenorhabditis elegans Hypothetical ...    29   2.2  
AC024759-2|AAM97964.1|  376|Caenorhabditis elegans Hypothetical ...    29   2.2  
AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF016433-1|AAB65388.1|  346|Caenorhabditis elegans Seven tm rece...    27   6.7  

>U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm receptor
           protein 139 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 345 YLISLGMFIYYFHVQIPYYICLK*VARTVKPII*QLLYIFLVFVVYGVLYA 497
           + + L  ++ +F  Q    + L  +A   K +     Y+ +VFV+Y ++Y+
Sbjct: 4   FAVHLVQYVGFFLAQFTNALLLCIIANKAKKLFGGYRYVMIVFVIYSLIYS 54


>AC024759-3|AAK68433.1|  355|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3a protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 85  GAWGVSQGXKVLFSFVHHQNASCSKPXLNI 174
           G  G+S G K  F+  +H+N  C K  L++
Sbjct: 35  GIPGISDGFKFAFTETNHENVPCDKKILDV 64


>AC024759-2|AAM97964.1|  376|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3c protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 85  GAWGVSQGXKVLFSFVHHQNASCSKPXLNI 174
           G  G+S G K  F+  +H+N  C K  L++
Sbjct: 56  GIPGISDGFKFAFTETNHENVPCDKKILDV 85


>AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3b protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 85  GAWGVSQGXKVLFSFVHHQNASCSKPXLNI 174
           G  G+S G K  F+  +H+N  C K  L++
Sbjct: 56  GIPGISDGFKFAFTETNHENVPCDKKILDV 85


>AF016433-1|AAB65388.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 140 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 345 YLISLGMFIYYFHVQIPYYICLK*VARTVKPII*QLLYIFLVFVVYGVLYA 497
           + I L  +I +   Q    + L  +A   K ++    Y+ +VFV+Y + Y+
Sbjct: 4   FAIHLVQYIGFSLAQFTNLLLLYIIANKAKKLLGGYRYVMIVFVIYSLFYS 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,989,139
Number of Sequences: 27780
Number of extensions: 208280
Number of successful extensions: 400
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)