Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P17
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.2  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   8.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.2  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 95 PQAPRAERRRNGNDKTKHERRWKT 24
          P+  R +R  NG + +  E+R +T
Sbjct: 2  PRTRRVKRSHNGKNGSPEEKRPRT 25


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -3

Query: 414 ISNKYNMESAHGNNI*TFLMKLNKLVYPMLK*PIY 310
           +SN YN  + + NN       +N +    +  P+Y
Sbjct: 85  LSNNYNYSNYNNNNYKQLCYNINHIEQIPVPVPVY 119


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 87  APSGETTKRKRQNEAREALEDA 22
           AP+G TT+ K      EAL++A
Sbjct: 224 APAGLTTEVKSVEMHHEALQEA 245


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 87  APSGETTKRKRQNEAREALEDA 22
           AP+G TT+ K      EAL++A
Sbjct: 281 APAGLTTEVKSVEMHHEALQEA 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,538
Number of Sequences: 438
Number of extensions: 2644
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)