Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P14
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    89   6e-19
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.5  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    26   3.4  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.4  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    25   5.9  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   7.7  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   7.7  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   7.7  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   7.7  

>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 88.6 bits (210), Expect = 6e-19
 Identities = 41/120 (34%), Positives = 74/120 (61%)
 Frame = +3

Query: 177 FARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSDKPLVQE 356
           F + L+ N+ K R++ +++L+++L     +  +F+  DF ++WKG+FY MWM+DKPL Q+
Sbjct: 7   FIKKLAANDRKTRDKALESLQRFLS----QKKKFERLDFLKLWKGLFYCMWMADKPLYQQ 62

Query: 357 DLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGIDQHRIDKFLMLARRYLRGSIR 536
            L++N+A ++   P   + + +L     ++ +  EW GID  R DKF +L RR+   + R
Sbjct: 63  KLSDNLAALV---PIVWIDNRILFQSTFWETMGREWTGIDILRTDKFYLLMRRFCAAAFR 119


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 192 SGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSDKP 344
           +G+E+KV ++V + +   +  CF + +E +E   T   + I Y+   S  P
Sbjct: 99  TGHESKVSDQVKQVISTPMSTCFEQWFEGEEQSSTGNNQDISYSSVNSLSP 149


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 358 SSCTSGLSDIHIA*NIPFH 302
           SS +SG SD+HIA N  FH
Sbjct: 399 SSASSGGSDVHIAFNYWFH 417


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 413  SCNAYDKGWLQGVGHGVVWN 472
            SC  Y   +L   GHG+V+N
Sbjct: 1308 SCGEYFSSFLNSSGHGIVYN 1327


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 308 LPHSREIIFFEFVSPVKTILEPL 240
           +P  R  + F+FVSP+KT+   L
Sbjct: 131 IPDVRSQLGFDFVSPIKTVYNVL 153


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 274 NSKKMISRECGRVYFTRCGCRISHL 348
           N++K +    G   FTRC CR + L
Sbjct: 76  NNEKSVKPSNGPHLFTRCSCRCNKL 100


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 213  RERVIKTLKKWLQNCFHRGYEFKEDDFTRV 302
            RE  +KT K+ L NC H  +++   ++  V
Sbjct: 1463 RELQLKTAKEILSNCKHLDFDYVNGEWATV 1492


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 357 LLVQVAYPTSTSRKIYP 307
           LL+ ++ P STSRK+ P
Sbjct: 499 LLIDISAPASTSRKVLP 515


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 165 QEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE 275
           Q + F+ LLS   + VR+ +++ +      CFH  Y+
Sbjct: 43  QTLSFSLLLSNTIHDVRQVILELMLAPPHTCFHLEYK 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,484
Number of Sequences: 5004
Number of extensions: 43894
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)