Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_P14
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 69 3e-12
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169... 33 0.16
01_01_0697 - 5389071-5389487,5390301-5390390,5390472-5390536,539... 30 1.5
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 29 2.6
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 29 3.4
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156 28 4.5
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 7.9
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57... 27 7.9
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 27 7.9
05_02_0045 - 5972122-5972274,5974041-5974070,5976206-5977030,597... 27 7.9
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 68.9 bits (161), Expect = 3e-12
Identities = 42/135 (31%), Positives = 58/135 (42%)
Frame = +3
Query: 162 AQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSDK 341
A+ AR L+ RER ++ L D ++WKG+F+ W SDK
Sbjct: 11 AEAAAIARRLASCNGSARERAVRHLLSTFLPA--SAPHLSASDLLKLWKGLFFCFWHSDK 68
Query: 342 PLVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGIDQHRIDKFLMLARRYL 521
PL Q LA +A + P A A L EW ID HR+DKF +L RR+L
Sbjct: 69 PLYQSSLATRLAAGVSSGPSPAA--AAAFFAAYLATLRREWVHIDTHRLDKFYLLNRRFL 126
Query: 522 RGSIRCLXRCEWSVD 566
+ L ++ D
Sbjct: 127 HHAFLLLAANSFAAD 141
>03_04_0058 -
16915281-16915313,16915424-16915535,16915585-16916990,
16919112-16919282
Length = 573
Score = 33.1 bits (72), Expect = 0.16
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 153 AVVAQEIKFARLLSGNENK-VRERVIKTLKKWLQNCFHRGYEFKEDDFTR-VWKGIFYAM 326
A V Q +F +L + + K + +K +WLQN HRG + + TR V +++
Sbjct: 180 AAVVQTAEFGQLAAESVPKNLHCLTVKLTVEWLQNPKHRGRSEEHRNSTRLVDNNLYHFA 239
Query: 327 WMSDKPLVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGIDQHR 485
SD L + + +H P+ L ++ + F ++T WF I+ +
Sbjct: 240 IFSDNVLATSVVVNSTVSNANH--PQQLVFHVVTDRVHFGAMST-WFLINDFK 289
>01_01_0697 -
5389071-5389487,5390301-5390390,5390472-5390536,
5391106-5391176,5391297-5391335,5392938-5393350
Length = 364
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 372 IAGILDHFPPEHLHHAMLMTKAGFKVLATEWFG 470
I G+ +H +LH A L+T GF V A +W G
Sbjct: 144 IHGLNEH-SGRYLHFAELLTSCGFGVYAMDWIG 175
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 225 IKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSD 338
+K L ++L+NC +FKED+F + FY M D
Sbjct: 564 VKDLLRFLRNCRRHAAQFKEDEFPSI-VDHFYPKLMCD 600
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 415 MQCL*QRLASRCWPRSGLESINIELINFLCLP 510
++C + L CW G+E + FLCLP
Sbjct: 511 LKCFLETLRDECWKDDGIEQ-GYDAFRFLCLP 541
>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
Length = 598
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 359 PSGEYSRHPGSFSTRTSSSCNAYDKGWL 442
P GE PG+ S+R ++YD GWL
Sbjct: 336 PDGELRPVPGANSSRAIPYFSSYDDGWL 363
>11_06_0395 +
23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.5 bits (58), Expect = 7.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 258 FHRGYEFKEDDFTRVW 305
F +GYEFK+D+ ++W
Sbjct: 669 FPKGYEFKKDEIVKMW 684
>08_01_0081 -
574119-575204,575794-576191,576321-576382,576581-576653,
576754-576824,576961-577148,577230-577377,577465-577503,
577601-577656,577745-577798,577900-578003,578117-578217,
578726-578796,578912-578968,579306-579422,579653-579682
Length = 884
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 135 TKKEQVAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCF 260
T + +A+V IK L + K V LKKW+ NC+
Sbjct: 42 TLNDMMAIVPLMIKMLGLNLKDNAKGLASVYDPLKKWMDNCY 83
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = +3
Query: 198 NENKVRERVIKTLKKWLQNCFHRGYE--FKEDDFTRVWKGIFYAMWMSDKPLVQEDLAEN 371
N + E V + W Q E ++E F + ++ K L++E ++N
Sbjct: 486 NGSPFEEYVFPNMSSWFQKHVSLNCENLYEEKSFQNSENPFEELVLLNKKDLLEELESQN 545
Query: 372 IAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGIDQHRID 491
+ + +++ H+M K + + G+ Q RID
Sbjct: 546 NNNLSEEKTLQNIKHSMSRDDPNVKAILSRSGGLPQRRID 585
>05_02_0045 -
5972122-5972274,5974041-5974070,5976206-5977030,
5977110-5977196,5977294-5977395
Length = 398
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 330 MSDKPLVQEDLAENIAGILDHFP 398
M+ PL+ D++E + GIL HFP
Sbjct: 70 MATTPLLTSDISEFMEGILYHFP 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,242,293
Number of Sequences: 37544
Number of extensions: 277111
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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