Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_P14
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68882-10|CAA93111.1| 397|Caenorhabditis elegans Hypothetical p... 89 2e-18
AL117200-15|CAB55049.2| 609|Caenorhabditis elegans Hypothetical... 33 0.11
Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical pr... 33 0.14
U64835-4|AAG24197.2| 343|Caenorhabditis elegans Serpentine rece... 29 1.8
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr... 28 4.1
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ... 28 4.1
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ... 28 4.1
U58749-6|AAU05599.2| 276|Caenorhabditis elegans Hypothetical pr... 27 9.4
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 27 9.4
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z68882-10|CAA93111.1| 397|Caenorhabditis elegans Hypothetical
protein C47E12.7 protein.
Length = 397
Score = 89.0 bits (211), Expect = 2e-18
Identities = 47/139 (33%), Positives = 76/139 (54%)
Frame = +3
Query: 150 VAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMW 329
V + + E+ FA+ L+ E R+R ++ L W+++ + + F + D R+ KG+ Y MW
Sbjct: 3 VDLASVEVVFAQKLACGEPATRQRALRVLHDWIRDQSAKKH-FDDADLMRLCKGLHYVMW 61
Query: 330 MSDKPLVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGIDQHRIDKFLMLA 509
M DK ++QE+LA+ I G+++ F E + K L+ EW ID+ R+DKFLM
Sbjct: 62 MQDKMILQEELADRIGGLINIFTSE--EEKVRFVACFLKSLSKEWPHIDRWRMDKFLMEV 119
Query: 510 RRYLRGSIRCLXRCEWSVD 566
RR +R L +W D
Sbjct: 120 RRMVRACFTHLAELKWKKD 138
>AL117200-15|CAB55049.2| 609|Caenorhabditis elegans Hypothetical
protein Y50E8A.6 protein.
Length = 609
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 210 VRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGI 314
V E+ I+ + K + F + YE K +D T +W GI
Sbjct: 355 VTEKEIQYILKEMNRAFEKEYEIKREDVTSIWSGI 389
>Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical
protein T03D8.6 protein.
Length = 578
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +3
Query: 318 YAMWMSDKPLVQEDLAENIAGILDHFPPEH-LHHAMLMTKAGFKVLAT----EWFG 470
Y W+ D+ + ++N GI + PP+H H M + G V AT WFG
Sbjct: 355 YTQWVIDRMTDKAQSSKNYGGIAQYVPPDHGTSHVSAMDQYGNGVSATTTINRWFG 410
>U64835-4|AAG24197.2| 343|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 25 protein.
Length = 343
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 449 VGHGVVWNRST*N**I-SYACP*IFTWEYPVSAT 547
+ H V W + T N I S CP +FTW+ +S T
Sbjct: 140 IWHKVFWKKHTNNVIIVSLICPALFTWQLAISPT 173
>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
protein.
Length = 1651
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 488 NSMLIDSKPLRGQHLEASLCHKHCMMKMF 402
+S LI+S LR QHL A + KH ++ F
Sbjct: 258 SSFLINSVELRSQHLFAPISEKHQLVSAF 286
>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
a protein.
Length = 1650
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 488 NSMLIDSKPLRGQHLEASLCHKHCMMKMF 402
+S LI+S LR QHL A + KH ++ F
Sbjct: 258 SSFLINSVELRSQHLFAPISEKHQLVSAF 286
>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
c protein.
Length = 1651
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 488 NSMLIDSKPLRGQHLEASLCHKHCMMKMF 402
+S LI+S LR QHL A + KH ++ F
Sbjct: 258 SSFLINSVELRSQHLFAPISEKHQLVSAF 286
>U58749-6|AAU05599.2| 276|Caenorhabditis elegans Hypothetical
protein B0496.3c protein.
Length = 276
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 350 TRRPS-GEYSRHPGSFSTRTSSSCNAY 427
TR P +Y ++PGS S TSS+ N Y
Sbjct: 230 TREPYVAQYRKYPGSTSRDTSSALNRY 256
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical protein
B0496.3a protein.
Length = 1551
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 350 TRRPS-GEYSRHPGSFSTRTSSSCNAY 427
TR P +Y ++PGS S TSS+ N Y
Sbjct: 1505 TREPYVAQYRKYPGSTSRDTSSALNRY 1531
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical protein
B0496.3b protein.
Length = 1592
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 350 TRRPS-GEYSRHPGSFSTRTSSSCNAY 427
TR P +Y ++PGS S TSS+ N Y
Sbjct: 1546 TREPYVAQYRKYPGSTSRDTSSALNRY 1572
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,350,649
Number of Sequences: 27780
Number of extensions: 243904
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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