Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_P13
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 141 5e-35
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 136 2e-33
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 28 0.98
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.98
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 1.3
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 3.0
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 9.1
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 9.1
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 9.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 9.1
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 9.1
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 141 bits (342), Expect = 5e-35
Identities = 70/115 (60%), Positives = 85/115 (73%), Gaps = 1/115 (0%)
Frame = +2
Query: 92 LRTRKFMXNXLLARKQXVCXVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGG 271
+RTRKFM N LL RKQ V +LHPGK +SK EIREKLA+MYK + V FG +T+FGG
Sbjct: 7 IRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFGG 66
Query: 272 GKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 433
G+STGFALIYD+ + KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 67 GRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 136 bits (328), Expect = 2e-33
Identities = 65/115 (56%), Positives = 83/115 (72%), Gaps = 1/115 (0%)
Frame = +2
Query: 92 LRTRKFMXNXLLARKQXVCXVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGG 271
+RTRKFM N LL RKQ V +LHPGK +SK ++REKL +MYK V FG +T++GG
Sbjct: 7 IRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYGG 66
Query: 272 GKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 433
G++TGFALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 67 GRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 27.9 bits (59), Expect = 0.98
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 66 SKCVXXQRLFALANSXPTXCWRASXWFAXFY--IQENQLSARPRSVR 200
+K V +R+ AL N WR W A ++ IQ+ + S P S R
Sbjct: 149 TKIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIRNSLTPASSR 195
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.98
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 323 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 421
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 188 EIREKLAKMYKVTPDVVFVFGFKTNFGG 271
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 235 SVRIRFQDKLRRWQINWIRFDLRHTRSGQEVRAQ-AQVSPPRPVREEEA 378
S R + +LRR + DLR +R G E RA+ A+ PR V E A
Sbjct: 385 SEAFRRRQELRRERRRQAEKDLRLSRMGAEKRAKLAEKDRPRDVAERVA 433
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 317 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 421
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 270 PPKFVLKPNTNTTSGVTLYILASFS 196
PPK LKP+ +T+ ++ Y LA S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 9.1
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +2
Query: 323 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 424
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 277 FATSEVCLETEYEHYIGSNL 218
+A SE LE EYE +GS L
Sbjct: 1296 YAASENILEIEYEDEVGSGL 1315
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 365 EKKRPTRKQRKERKNRMKKVRGT 433
E+ +P ++ +E +NR+ ++RGT
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGT 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,289
Number of Sequences: 5004
Number of extensions: 35958
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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