Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P13
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526...   159   2e-39
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725...   155   2e-38
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165...   123   3e-33
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369...    30   1.3  
02_03_0347 - 17999780-18000592,18000656-18003019                       29   3.0  
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118...    27   7.0  
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890     27   9.2  

>01_06_0550 -
           30151494-30151526,30151620-30151706,30152458-30152628,
           30152716-30152757,30152856-30152939
          Length = 138

 Score =  159 bits (385), Expect = 2e-39
 Identities = 75/114 (65%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
 Frame = +2

Query: 92  LRTRKFMXNXLLARKQXVCXVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFG 268
           LRTRKFM N LL+RKQ V  V+HPG+P VSK E++EKLAK+Y+V   + +FVF F+T+FG
Sbjct: 12  LRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHFG 71

Query: 269 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 430
           GGKSTGF LIYD LD AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct: 72  GGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125


>02_02_0153 -
           7258002-7258034,7258137-7258223,7258991-7259161,
           7259261-7259386
          Length = 138

 Score =  155 bits (376), Expect = 2e-38
 Identities = 74/114 (64%), Positives = 90/114 (78%), Gaps = 1/114 (0%)
 Frame = +2

Query: 92  LRTRKFMXNXLLARKQXVCXVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFG 268
           LRTRKFM N LL+RKQ V  VLHPG+  VSK +++EKLAK+Y+V   + +FVF F+T+FG
Sbjct: 12  LRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFG 71

Query: 269 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 430
           GGKSTGF LIYD LD AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct: 72  GGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125


>06_03_0440 +
           20815528-20815653,20815742-20815912,20816501-20816584,
           20818831-20818917,20819044-20819076
          Length = 166

 Score =  123 bits (297), Expect(2) = 3e-33
 Identities = 58/88 (65%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
 Frame = +2

Query: 92  LRTRKFMXNXLLARKQXVCXVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFG 268
           LRTRKFM N LL+RKQ V  VLHPG+  VSK +++EKLAK+Y+V   + +FVF F+T+FG
Sbjct: 12  LRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFG 71

Query: 269 GGKSTGFALIYDTLDLAKKFEPKHRLAR 352
           GGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 72  GGKSTGFGLIYDNLDAAKKYEPKYRLIR 99



 Score = 35.9 bits (79), Expect(2) = 3e-33
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 353 HGLYEKKRPTRKQRKERKNRMKKVRG 430
           +GL  K   +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153


>01_01_0502 -
           3688940-3689149,3689180-3689251,3690028-3690064,
           3691224-3691705
          Length = 266

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 283 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 384
           W R  +R +  G E    AQ+ PPRPV  + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187


>02_03_0347 - 17999780-18000592,18000656-18003019
          Length = 1058

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 163 WM*NXANXLLARQQXVGHEFASAKXRCXXTHFE*FSXIRRRHARGAAKTRHRPA 2
           W+ + AN ++  QQ +G    S   +   T    F   RRR  R AA TR   A
Sbjct: 105 WLDDVANLVMTAQQRLGAGGRSFAPKASGTATTGFMSSRRRARRAAAVTRRSSA 158


>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
            24812083-24812246,24812436-24812624,24813151-24813408,
            24813463-24813951,24814062-24814262,24814368-24814639,
            24814661-24814685,24814776-24814937,24815065-24815104,
            24815244-24815353,24815812-24815898,24816013-24816507
          Length = 1057

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 356  GLYEKKRPTRKQRKERKNRMKK 421
            G+YE++R  R+Q KER+ +  K
Sbjct: 999  GVYERERNMRQQEKERRKQQSK 1020


>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
          Length = 216

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 223 YSRCSVRIR-FQDKLRRWQINWI 288
           + RC VR+  F  KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,348,137
Number of Sequences: 37544
Number of extensions: 257026
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)