Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P12
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    63   4e-11
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    34   0.022
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   3.4  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   3.4  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   7.8  

>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 21/137 (15%)
 Frame = +1

Query: 124 IASMQAPNSIIKNTEKVVVIKXKYPKAKVHYLVLPHE-EINSIYKLN--KSHISLLEEF- 291
           I S ++  ++I   + VV+++  +PK+K+H L++  +  +  ++ L     H SL+E+  
Sbjct: 42  IESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLV 101

Query: 292 --------GNIFKELKE------ENES---ELRAGFHAIPSMQRMHMHVISTDMISTSLK 420
                   G IF E +        NE+    ++ GFHA PSM  +H+H+++ D +S SLK
Sbjct: 102 SYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLK 161

Query: 421 TKIHWNSFCTKFFIPYD 471
              H+ SF + FF+  D
Sbjct: 162 NSAHYISFTSPFFVKID 178


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = +1

Query: 235 EINSIYKLNKSHISLLEEFGN-IFKELKEE---NESELRAGFHAIPSMQRMHMHVISTD 399
           +I SI  L   HI LLE   N +  E+ ++   ++++L+   H +PS   +H+H++  D
Sbjct: 193 DIASIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQLKMFVHYLPSYYHLHVHILHVD 251


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 211 HYLVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESEL 336
           ++++ PH + +   K+ + H +L  +F  +F+ L  ENE  +
Sbjct: 408 YFMIFPHSDQSLQNKVFELHSTLAIKFDELFRLLNLENEESV 449


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 232  EEINSIYKLNKSHISLLEEFGNIFKEL 312
            EE+ S++ ++KS  S   +FGN+F  L
Sbjct: 1321 EEVCSVFNISKSVCSKYVQFGNVFNLL 1347


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 454  FFIPYDGEFAIHAYDISHIFLGRVSLLNIVSWSST 558
            F +PY   + ++ Y++  +F G      I  WS+T
Sbjct: 1102 FRVPYTDTYELNVYNVDDVFYGWFGDKAISGWSNT 1136


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +1

Query: 211 HYLVLPH--EEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQRMHMH 384
           H+L+  H   EI  +Y L  S     ++     ++      S ++   H I   +  +  
Sbjct: 317 HFLISDHIFSEIQKVYFLPSSQNDSFDDVVACLRQKSTPYLSFIKKARHLIQVSRDKYKL 376

Query: 385 VISTDMISTSLKTKIHWNSF 444
            IST+ I   + +++ W  F
Sbjct: 377 PISTEEIKPVVYSQVTWTEF 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,066
Number of Sequences: 5004
Number of extensions: 61323
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)