Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_P12
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 63 3e-10
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 34 0.16
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 33 0.22
12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342... 31 0.88
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 31 1.5
05_01_0105 + 696604-696846,696880-697989 30 2.7
01_03_0205 + 13777918-13778015,13778402-13778624,13779022-137791... 29 4.7
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 28 8.2
12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,336... 28 8.2
11_01_0443 - 3399226-3399242,3399551-3399731,3399847-3399936,340... 28 8.2
06_03_1377 - 29692895-29692899,29700435-29702190 28 8.2
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +1
Query: 193 YPKAKVHYLVLPHEE-INSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQ 369
Y +AK H LV+ ++ ++S+ + K H+ LL + + ++ L +PSM+
Sbjct: 592 YLQAKRHVLVVSRKDGLDSLADVKKEHLPLLRRMHSAGVKWAQKF---LEEDSSLVPSMR 648
Query: 370 RMHMHVISTDMISTSLKTKIHWNSFCTKFFI 462
++H+H+IS D S SLK K HWNSF T FF+
Sbjct: 649 QLHLHIISQDFNSASLKNKKHWNSFTTTFFL 679
>04_04_0631 -
26728144-26728228,26728321-26728398,26728584-26728650,
26728748-26728824,26729961-26730012,26730248-26730294,
26730457-26730527
Length = 158
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +1
Query: 211 HYLVLPHEEI---NSIYKLNKSH--ISLLEEFGNIFKELKEENESELRAGFHAIP--SMQ 369
HYLV+P E I N++ + + H +S + G N E R GFH P S+
Sbjct: 58 HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD 117
Query: 370 RMHMHVIS 393
+H+H ++
Sbjct: 118 HLHLHCLA 125
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 124 IASMQAPNSIIKNTEKVVVIKXKYPKAKVHYLVLP--HEEINSIYKLNKSHISLL 282
I + + P++++ EKV+ + P+A VH LV+P + + + K H+ +L
Sbjct: 50 IIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPKIRDGLTGLDKAEPRHVEIL 104
>12_02_0356 +
17915029-17916236,17932970-17933283,17933936-17934244,
17934613-17935439
Length = 885
Score = 31.5 bits (68), Expect = 0.88
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Frame = +1
Query: 124 IASMQAPNSIIKNTEKVVVIKXKYPKAKVHYL--------VLPHEEINSIYKLNKSHISL 279
+++++ I K+ +Y AK+H+L +LPHE +N +Y ++
Sbjct: 57 VSNLETAYEIWNKLAKIHEGASEYKDAKLHFLKIQYETFSILPHESVNDMYGRLNVIVND 116
Query: 280 LEEFGNIFKELKEENESELRAGFHAIPSMQRMHMHVISTDMISTSLKTKIHWN 438
L+ G + +L E+ + LRA ++ M ++ M SL KI+ N
Sbjct: 117 LKGLGATYTDL-EDAQKMLRALPEKYETLVTMLINSDMLRMTPASLLVKINTN 168
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 124 IASMQAPNSIIKNTEKVVVIKXKYPKAKVHYLVLP--HEEINSIYKLNKSHISLL 282
I + P++++ + EKV+ + P+A H +++P + + + K + H+ +L
Sbjct: 199 IIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVEIL 253
>05_01_0105 + 696604-696846,696880-697989
Length = 450
Score = 29.9 bits (64), Expect = 2.7
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Frame = +1
Query: 190 KYPKAKVHYL--------VLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAG 345
+Y AK+H+L +LPHE +N +Y ++ L+ FG + +L E + LRA
Sbjct: 93 EYKDAKLHFLNIQYETFSMLPHESVNDMYGRLNVIVNGLKGFGANYTDL-EVAQKMLRAL 151
Query: 346 FHAIPSMQRMHMHVISTDMISTSLKTKIHWN 438
++ M ++ + M SL KI+ N
Sbjct: 152 PEKYETLVTMLINSDMSRMTPASLLGKINTN 182
>01_03_0205 +
13777918-13778015,13778402-13778624,13779022-13779198,
13779277-13779437,13779520-13780519,13780923-13781069,
13781149-13781376,13781471-13781628,13781807-13782161
Length = 848
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 397 DMISTSLKTKIHWNSFCTKFFIPYDGEFAIHAYD----ISHIFLGRVSLLN 537
DM+ T + NSF T FF D A+ AY+ + HI L R+SL++
Sbjct: 567 DMLRTEVVKLCQDNSFNTGFFEGIDNSIAVDAYELKVRLEHI-LERISLIS 616
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 28.3 bits (60), Expect = 8.2
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Frame = +1
Query: 190 KYPKAKVHYL--------VLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAG 345
+Y AK+H+L +LPHE +N +Y ++ L+ G + +L E + LRA
Sbjct: 92 EYKDAKLHFLKIQCETFSMLPHESVNDMYGRLNVIVNDLKGLGATYTDL-EVAQKMLRAL 150
Query: 346 FHAIPSMQRMHMHVISTDMISTSLKTKIHWN 438
++ M ++ + M SL KI+ N
Sbjct: 151 PEKYETLVTMLINSDMSRMTPASLLGKINTN 181
>12_01_0427 +
3359766-3360092,3360425-3360541,3360738-3360893,
3361009-3361144,3361303-3361436,3361832-3361987,
3362496-3362594,3362817-3362932,3363358-3363532,
3363807-3363885,3363989-3364132,3364206-3364319,
3364415-3364536,3364929-3365011,3365091-3365188,
3365300-3365420,3366237-3366333,3366782-3366874,
3366948-3367053,3367395-3367540,3367617-3367697,
3367838-3367921,3367997-3368132,3368334-3368400,
3368943-3369102
Length = 1048
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 349 HAIPSMQRMHMHVISTDMISTSLKTKIHWNSFCTKFFIPYDGEFAIHAYDISHI 510
H + + +++HVI + S+ L KI W++F + P F + A +I+ +
Sbjct: 159 HRYHAKRCLYLHVIEKSLRSSPLIQKISWSTFLDEARKPILHYFTVAAKEIAEL 212
>11_01_0443 -
3399226-3399242,3399551-3399731,3399847-3399936,
3400377-3400459,3400540-3400667,3400747-3401002,
3401094-3401199,3401300-3401366,3401467-3401580,
3401811-3401889,3402189-3402359,3403135-3403267,
3403874-3404033,3404119-3404261
Length = 575
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 349 HAIPSMQRMHMHVISTDMISTSLKTKIHWNSFCTK 453
HA SM +HM + S + L +H SFC K
Sbjct: 339 HAAISMVSLHMRIFSLLIPCFFLMVSVHLTSFCVK 373
>06_03_1377 - 29692895-29692899,29700435-29702190
Length = 586
Score = 28.3 bits (60), Expect = 8.2
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Frame = +1
Query: 190 KYPKAKVHYL--------VLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAG 345
+Y AK+H+L +LPHE +N +Y ++ L+ G + +L E + LRA
Sbjct: 104 EYKDAKLHFLKIQYETFSMLPHESVNDMYGRLNVIVNDLKRLGANYTDL-EVAQKMLRAL 162
Query: 346 FHAIPSMQRMHMHVISTDMISTSLKTKIHWN 438
++ M ++ + M SL KI+ N
Sbjct: 163 PEKYETLVTMLINSDMSRMTPASLLGKINTN 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,859,643
Number of Sequences: 37544
Number of extensions: 321864
Number of successful extensions: 839
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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