Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P12
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   33   0.22 
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          29   3.6  
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)              29   4.8  
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +2

Query: 14  ILHSSISWSKSTNSASAQKSSFQXPFKNTK 103
           I+ S+ SWS+ T++  ++K++FQ P K TK
Sbjct: 185 IVLSTASWSRKTSAPPSEKNAFQPPMKKTK 214


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 235  EINSIYKLNKSHISLLEEFGNIFKELKEENE 327
            E +S+Y LN+S  S LEEF N+    K+EN+
Sbjct: 1367 ERSSVYALNESSRSELEEFKNMNNNFKDEND 1397


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = +2

Query: 428  YIGIVSVQSFLFPTMVSLQFMLTISHIFFWDVYLY*I*FLGAVQNVIVLFSNWNY---LN 598
            Y  ++    ++FP +    F   I+H +F+ +  Y   F+    + I      +Y   + 
Sbjct: 1072 YFFVIITHHYIFPIITHHDFFSIITHHYFFSIITYHYFFVIITHHYIFSIFTHHYFFSII 1131

Query: 599  REL*DFIYISYELIFYIF 652
                 F+ I+Y  IF IF
Sbjct: 1132 THHYSFVIITYHYIFSIF 1149


>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
          Length = 584

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +1

Query: 142 PNSIIKNTEKVVVIKXKYPKAKVHYLVLPHEEINSIYKL----NKSHISLLEEF 291
           PN+II + +++V  K +  KAKV  L   H  + S++      NK+  S ++EF
Sbjct: 191 PNAIIDHEKEIVKTKMEVVKAKVSDLSHAHANVFSLFSRLGAENKALTSEIDEF 244


>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 7   CXNSPFIHLLVKVHQFCVSAKI--LLPVSLQKHQN 105
           C +SP IH L+   QFC +A      P+S+ + +N
Sbjct: 327 CGDSPTIHTLIDYEQFCGTAATDKSKPISILEREN 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,942,320
Number of Sequences: 59808
Number of extensions: 411432
Number of successful extensions: 1000
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)