Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_P12
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53148-1|AAB37071.1| 175|Caenorhabditis elegans Hypothetical pr... 49 4e-06
AC006666-2|AAK21416.2| 244|Caenorhabditis elegans Hypothetical ... 31 0.78
Z71261-3|CAA95802.1| 130|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 4.2
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 4.2
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 4.2
AF067211-6|AAC16989.1| 308|Caenorhabditis elegans Serpentine re... 29 4.2
AF067211-5|AAW88420.1| 329|Caenorhabditis elegans Serpentine re... 29 4.2
U49954-5|AAA93427.2| 445|Caenorhabditis elegans Odorant respons... 28 9.6
U49954-4|AAN84809.1| 473|Caenorhabditis elegans Odorant respons... 28 9.6
U49954-3|AAN84808.1| 475|Caenorhabditis elegans Odorant respons... 28 9.6
AF055911-1|AAC39022.1| 445|Caenorhabditis elegans odorant respo... 28 9.6
AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ... 28 9.6
>U53148-1|AAB37071.1| 175|Caenorhabditis elegans Hypothetical
protein C26F1.7 protein.
Length = 175
Score = 49.2 bits (112), Expect = 4e-06
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Frame = +1
Query: 154 IKNTEKVVVIKXKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEEN--- 324
+K + VVI PKAK HYLVL + I L + + LLEE +EL E+
Sbjct: 25 LKENKSCVVINDIKPKAKNHYLVLSKQHIAKPTDLTVADVPLLEEMEKTGRELLREHLKK 84
Query: 325 -------ESELRAGFHAIP--SMQRMHMHVI 390
E LR GFH P S+ +HMH+I
Sbjct: 85 KGEADTVEDMLRIGFHLPPLLSVHHLHMHII 115
>AC006666-2|AAK21416.2| 244|Caenorhabditis elegans Hypothetical
protein H31G24.3 protein.
Length = 244
Score = 31.5 bits (68), Expect = 0.78
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +1
Query: 355 IPSMQRMHMHVISTDMISTSLKTKIHWNSFCTKFFIPYDGEFAIHAYDISHIFLGRVSLL 534
+ S++ H D+ S KIH+ K + D +F+ +I + G V +L
Sbjct: 53 VVSIKLRHRRRNVDDIWSMDATVKIHFEQDWLKGEVQVDSQFSNQGQEIEILNCGTVVIL 112
Query: 535 NIVSWSSTECYCV 573
N S SST C V
Sbjct: 113 NAFSNSSTFCESV 125
>Z71261-3|CAA95802.1| 130|Caenorhabditis elegans Hypothetical
protein F21C3.3 protein.
Length = 130
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Frame = +1
Query: 124 IASMQAPNSIIKNTEKVVVIKXKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEEF---- 291
I + P II ++ + P+A +H+LV+P I+ + S +L+ +
Sbjct: 26 IIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDMLENAVDSDAALIGKLMVTA 85
Query: 292 GNIFKELKEEN--ESELRAGFHAIPSMQRMHMHVI 390
+ K+L N + G S+ +H+HV+
Sbjct: 86 SKVAKQLGMANGYRVVVNNGKDGAQSVFHLHLHVL 120
>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
protein Y81G3A.3 protein.
Length = 1696
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = +1
Query: 250 YKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQRMHMHVISTDMISTSLKTKI 429
+ L H L+E K L ++ +EL H I R H H DM++ + K
Sbjct: 1195 FTLKIGHAQLIEAQIRHLK-LSDDVRAELLDALHLISVSDRPHSHKEKMDMLTPKIGAKA 1253
Query: 430 HWNSFCTKFFIPYDGEF 480
+ TK IP + F
Sbjct: 1254 --ANIITKLLIPVEDNF 1268
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 486 NCKLTIVGNKKLCTETIPMYFCFEGCGYHVCANNMHVHSLHTRYCVKTSSK 334
NCK + G K C + P YF F G C N++ S+ C +T+ K
Sbjct: 1008 NCKQGVFG--KQCDQCRPSYFNFTDAGCQFCHCNIY-GSIEDGKCDQTTGK 1055
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 486 NCKLTIVGNKKLCTETIPMYFCFEGCGYHVCANNMHVHSLHTRYCVKTSSK 334
NCK + G K C + P YF F G C N++ S+ C +T+ K
Sbjct: 1008 NCKQGVFG--KQCDQCRPSYFNFTDAGCQFCHCNIY-GSIEDGKCDQTTGK 1055
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 486 NCKLTIVGNKKLCTETIPMYFCFEGCGYHVCANNMHVHSLHTRYCVKTSSK 334
NCK + G K C + P YF F G C N++ S+ C +T+ K
Sbjct: 1008 NCKQGVFG--KQCDQCRPSYFNFTDAGCQFCHCNIY-GSIEDGKCDQTTGK 1055
>AF067211-6|AAC16989.1| 308|Caenorhabditis elegans Serpentine
receptor, class z protein85, isoform a protein.
Length = 308
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 509 FFWDVYLY*I*FLGAVQNVIVLFSNWNYLNREL*DFIYISYELIFYIFRI 658
F W YLY F+ + + + +++W L+ E+ D I I Y+ + I I
Sbjct: 131 FIW--YLYAFFFVNELIGIFLYWAHWFILSFEVIDVIIIFYQTAYMILNI 178
>AF067211-5|AAW88420.1| 329|Caenorhabditis elegans Serpentine
receptor, class z protein85, isoform b protein.
Length = 329
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 509 FFWDVYLY*I*FLGAVQNVIVLFSNWNYLNREL*DFIYISYELIFYIFRI 658
F W YLY F+ + + + +++W L+ E+ D I I Y+ + I I
Sbjct: 152 FIW--YLYAFFFVNELIGIFLYWAHWFILSFEVIDVIIIFYQTAYMILNI 199
>U49954-5|AAA93427.2| 445|Caenorhabditis elegans Odorant response
abnormal protein4, isoform a protein.
Length = 445
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 458 KNFVQKLFQCIFVLRDVDI 402
KNFV LFQC F L D +I
Sbjct: 210 KNFVNNLFQCEFTLLDGEI 228
>U49954-4|AAN84809.1| 473|Caenorhabditis elegans Odorant response
abnormal protein4, isoform c protein.
Length = 473
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 458 KNFVQKLFQCIFVLRDVDI 402
KNFV LFQC F L D +I
Sbjct: 240 KNFVNNLFQCEFTLLDGEI 258
>U49954-3|AAN84808.1| 475|Caenorhabditis elegans Odorant response
abnormal protein4, isoform b protein.
Length = 475
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 458 KNFVQKLFQCIFVLRDVDI 402
KNFV LFQC F L D +I
Sbjct: 242 KNFVNNLFQCEFTLLDGEI 260
>AF055911-1|AAC39022.1| 445|Caenorhabditis elegans odorant response
protein ODR-4 protein.
Length = 445
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 458 KNFVQKLFQCIFVLRDVDI 402
KNFV LFQC F L D +I
Sbjct: 210 KNFVNNLFQCEFTLLDGEI 228
>AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ion
channel protein 12 protein.
Length = 425
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 393 HRHDIHIPQNKNTLE*FLYKVFYSLRW*VCNSCLRYLTYFFGTCISTKYSFLEQY 557
H D+ ++KN L +++ F+S +C SC +FF CI T Y F+E +
Sbjct: 380 HLEDLD-SKDKNEL---IWQRFFSCADIICGSC-----FFFVNCIITFYMFIEYF 425
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,821,965
Number of Sequences: 27780
Number of extensions: 336550
Number of successful extensions: 901
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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