Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P12
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.88 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.88 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   2.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.7  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   8.2  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   8.2  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   8.2  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   8.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.2  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 217 LVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIP 360
           LVL  E+  + YKL ++   L ++    ++EL  E +   R  +  +P
Sbjct: 342 LVLMSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTDRLLYSVLP 389


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 217 LVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIP 360
           LVL  E+  + YKL ++   L ++    ++EL  E +   R  +  +P
Sbjct: 342 LVLMSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTDRLLYSVLP 389


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 407 PHPSKQKYIGIVSVQSFLFPTMV 475
           P+PS   YIG++++ +   PT +
Sbjct: 636 PYPSYYSYIGVLTLVATSMPTYI 658


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 523 HVPKKYVRYRKHELQTHHR 467
           H PK+ VR++ H+ + H +
Sbjct: 283 HAPKQTVRFKVHDPKAHSK 301


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 559 LYCSKKLYLVEIHVPKKYVRYRKHELQTHHRRE*KTLYRNYS 434
           LY  K+ +L E    K+Y R R+ E +++        YR  S
Sbjct: 22  LYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETS 63


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 559 LYCSKKLYLVEIHVPKKYVRYRKHELQTHHRRE*KTLYRNYS 434
           LY  K+ +L E    K+Y R R+ E +++        YR  S
Sbjct: 22  LYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETS 63


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 559 LYCSKKLYLVEIHVPKKYVRYRKHELQTHHRRE*KTLYRNYS 434
           LY  K+ +L E    K+Y R R+ E +++        YR  S
Sbjct: 22  LYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETS 63


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 559 LYCSKKLYLVEIHVPKKYVRYRKHELQTHHRRE*KTLYRNYS 434
           LY  K+ +L E    K+Y R R+ E +++        YR  S
Sbjct: 22  LYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYRETS 63


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 53  SASAQKSSFQXPFKNTKTLVFSASLH 130
           S S+   SF  PF NT  ++   S+H
Sbjct: 552 SRSSTLVSFLQPFSNTLWILVMVSVH 577


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 487 HAYDISHIFLGRVSLLNIVSW 549
           ++Y+IS+ F G  +L  +V+W
Sbjct: 269 YSYEISNAFRGNNNLKWLVNW 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,143
Number of Sequences: 438
Number of extensions: 4245
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)