Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P10
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   3.1  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   5.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   9.5  

>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 232 YGQVIHR-TYTGVTGDELHHSGWNVCSSCHDN 324
           Y   IH+ TY+GV   E   +G+ +   CHDN
Sbjct: 2   YNDQIHKITYSGVEVFEYTINGFPLMKRCHDN 33


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +1

Query: 274 DELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAVD 390
           DEL+H  WN     H N   +   L++   +    Y  D
Sbjct: 473 DELYHGEWNTVPGHHKNPKCRAKKLVVESRNGRREYVQD 511


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 365 IPAMSTPLTSGPILG 409
           IPA ST  TSGP++G
Sbjct: 556 IPAASTSATSGPVVG 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,661
Number of Sequences: 5004
Number of extensions: 63270
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)