Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P10
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428...   250   7e-67
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321...    34   0.11 
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779     31   1.1  
11_01_0605 + 4821363-4823246                                           29   5.7  
02_05_0636 + 30536717-30537022,30538836-30538952,30539026-305394...    29   5.7  

>01_06_1797 +
           39941482-39941608,39942302-39942497,39942601-39942828,
           39943157-39943388,39943476-39943583,39943696-39943968,
           39944261-39944545
          Length = 482

 Score =  250 bits (613), Expect = 7e-67
 Identities = 124/238 (52%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
 Frame = +1

Query: 100 GYASPLXAFNNGPREXLLYVVCVRPNK--NKQDYLATVDVDSKSATYGQVIHRTYTGVTG 273
           GYA+PL A   GPRE LLYV CV      NK DYL TVDVD  S TY QVIHR      G
Sbjct: 18  GYATPLEAMEKGPREKLLYVTCVYNGTGINKPDYLGTVDVDPNSPTYSQVIHRLPVTHVG 77

Query: 274 DELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAVDVGTDPRKPRLHKVIDGSKM-R 450
           DELHHSGWN CSSCH + +  R  LI+P L S  VY VD   DPR P LHKV++   +  
Sbjct: 78  DELHHSGWNACSSCHGDPSASRRFLILPSLLSGRVYVVDTLKDPRAPALHKVVEAEDIAE 137

Query: 451 SFNCSFPHTTHCLATGEIMISTMGDENENGKGD-FVLIDSKTLEVTGTWTKGKNLAKFGY 627
                FPHT+HCLA+GEIMIS +GD+  N  G+ F+L+DS+   V G W K  +   FGY
Sbjct: 138 KTGLGFPHTSHCLASGEIMISCLGDKEGNAAGNGFLLLDSE-FNVKGRWEKPGHSPLFGY 196

Query: 628 DFWYQPYHDVMISSXWGTPKYFKSGFHAXXISDPXRYGTKLNVYKWSTRELQQVIXLG 801
           D+WYQP H  MISS WG P  F++GF    + D   YG  L+VY W   EL+Q + LG
Sbjct: 197 DYWYQPRHKTMISSSWGAPAAFRTGFDLQHVQD-GLYGRHLHVYDWPGGELKQTLDLG 253


>04_04_1028 +
           30230224-30231274,30231500-30231609,30232144-30232170,
           30233107-30234252
          Length = 777

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 247 HRTYTGVTGDELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAV 387
           +  +T      LHH GW+   SC  N  +  D L  PG   C+ Y +
Sbjct: 165 YSNFTATFTSSLHHHGWSTNGSCTTNGRVNSDGL-CPGTACCDAYGM 210


>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
          Length = 704

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 136 PREXLLYVV-CVRPNKNKQDYLATVDVDSKSATYGQVIHRTYTGVTGDELHHSGWNV 303
           P E L  ++ C +PN+N   +LATVD+D + A     +  +   + G EL ++ W +
Sbjct: 272 PPEALAGLIKCEKPNRNIYGFLATVDLDGRRAV---SLGTSNIMLRGCELKNTAWAI 325


>11_01_0605 + 4821363-4823246
          Length = 627

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 461 QLNDLIFEPSITLCNRGFLGSVPTSTA*TLQE 366
           QL+DL    S+ L + GF G VPTS A +L++
Sbjct: 175 QLSDLPKLRSLNLSSNGFEGPVPTSIATSLED 206


>02_05_0636 +
           30536717-30537022,30538836-30538952,30539026-30539478,
           30539589-30540647
          Length = 644

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 333 QCRVVMATRTDIPAAVMQFVSCYSRVGAVNDLAVCCGFRINVHCCKIVL 187
           Q   V A R  I A ++Q +   SR GA+++        ++ H CKI +
Sbjct: 517 QANKVRAVRAGILAPLIQMLQDSSRNGAIDEALTILSVLVSHHECKIAI 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,617,018
Number of Sequences: 37544
Number of extensions: 427262
Number of successful extensions: 940
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)