Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P10
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13646| Best HMM Match : SBP56 (HMM E-Value=5.3e-14)                 89   4e-18
SB_33343| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_57064| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.36 
SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)                   31   1.4  
SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47)                      31   1.4  
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_45617| Best HMM Match : Plasmid_parti (HMM E-Value=3.4)             29   3.3  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_13646| Best HMM Match : SBP56 (HMM E-Value=5.3e-14)
          Length = 204

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 37/107 (34%), Positives = 61/107 (57%)
 Frame = +1

Query: 481 HCLATGEIMISTMGDENENGKGDFVLIDSKTLEVTGTWTKGKNLAKFGYDFWYQPYHDVM 660
           +C     I++S   +   N  G F+L+D +T  V G W +       GYDFWYQP H+V+
Sbjct: 36  NCTLRCRILVSAAQNRVRNNAGGFILLDGETFHVKGQWERDNVGVPMGYDFWYQPRHNVL 95

Query: 661 ISSXWGTPKYFKSGFHAXXISDPXRYGTKLNVYKWSTRELQQVIXLG 801
           +S+ WG P+ F  GF+   ++   ++G+ ++V+ W+T E  Q + LG
Sbjct: 96  MSTEWGAPEAFIRGFYLEDLTS-NKFGSHVHVWDWTTHEKVQTMDLG 141


>SB_33343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
 Frame = +1

Query: 130 NGPREXLLYVVCVRPNK--NKQDYLATVDVDSKSATYGQ 240
           +GPRE ++Y+ C+  N   NK DYLATVDVD  S TY Q
Sbjct: 2   SGPREQIVYLPCIHNNTPINKPDYLATVDVDPTSPTYSQ 40


>SB_57064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +1

Query: 253 TYTGVTGDELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAVDVGTDPRKPRLHKVI 432
           T T ++ DE+H  GW++    +  A      +    +H  N  +V +  +  +  +HK+ 
Sbjct: 22  TTTDMSPDEIHQLGWDMLGKLYPEAVRIAQEITEVNIHKLNPESVRIAQEITEVNIHKLN 81

Query: 433 DGS 441
            GS
Sbjct: 82  PGS 84


>SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)
          Length = 897

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = +1

Query: 526 ENENGKGDFVLIDSKTLEVTGTWTKGKNLAKFGYDFWYQPYHDVMISSXWGTPK 687
           E++   G  + +D    +V   W  GK +  + +  WY     V  +    TPK
Sbjct: 197 EHDTSYGVLISVDPSQYDVLRVWVIGKEIEPYDFGPWYSKIFTVAYNFVRSTPK 250


>SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47)
          Length = 642

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 680 VPHXEEIITSWYG*YQKS*PNLARFFPLV 594
           + + EE IT  YG  Q+S PNL+R+F +V
Sbjct: 595 IENAEEDITQQYGINQRSIPNLSRYFHVV 623


>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/110 (20%), Positives = 44/110 (40%)
 Frame = +1

Query: 400  DPRKPRLHKVIDGSKMRSFNCSFPHTTHCLATGEIMISTMGDENENGKGDFVLIDSKTLE 579
            + + P + K++  +K  S  C  P+     A G  ++STM       +   +  D KT+ 
Sbjct: 753  EEKYPYVCKILKEAKNPSVPCFLPNQKFLTAPGGALVSTMALGGYGNESISMANDGKTMA 812

Query: 580  VTGTWTKGKNLAKFGYDFWYQPYHDVMISSXWGTPKYFKSGFHAXXISDP 729
            VT   ++G  +    Y    Q     ++ +  GT   ++   +     DP
Sbjct: 813  VTMVGSEGLEVKIMDYQNGKQLRK--LVVTGTGTTSLYRCNHNILSEKDP 860


>SB_45617| Best HMM Match : Plasmid_parti (HMM E-Value=3.4)
          Length = 273

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 463 SFPHTTHCLATGEIMISTMGDENE-NGKGDFVLIDSKTLEVTGTWTKGKNLAKFGYDFWY 639
           S P   H +    +    +  EN  +GKG+FV+ D+K LE  G  +K K   K+  +F  
Sbjct: 54  SIPANKHAVNPATMYRLQLKSENGYSGKGNFVVHDNKELE--GILSKIKGNGKWKPEFVL 111

Query: 640 QPYHDVMI 663
           Q Y + +I
Sbjct: 112 QEYIEGVI 119


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 412  PRLHKVIDGSKMRSFNCSFPHTTHCLATGEIMISTMGDENENGKGD 549
            P+L      S +R  +C   H+   L++GE+    +G+    G GD
Sbjct: 1565 PKLIDTFKSSCVRDMSCGSSHSAAILSSGELYTWGLGEYGRLGHGD 1610


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,195,350
Number of Sequences: 59808
Number of extensions: 504494
Number of successful extensions: 1117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)