Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P09
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0343 + 12732673-12732792,12732903-12733091,12733220-127333...    31   0.86 
02_03_0134 - 15596379-15597689                                         30   1.5  
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834...    29   2.6  
01_07_0118 + 41176159-41178909                                         29   3.5  
09_06_0183 - 21406474-21406636,21407412-21407956                       28   6.1  
02_01_0498 - 3614621-3614674,3614780-3617161                           28   6.1  
01_06_0084 + 26286463-26288259                                         28   6.1  
07_01_1052 - 9234506-9235037,9235148-9235849,9236169-9236313,923...    28   8.0  
05_04_0248 - 19363567-19363814,19363900-19364092,19364202-19364846     28   8.0  

>05_03_0343 +
           12732673-12732792,12732903-12733091,12733220-12733387,
           12733468-12733522,12733646-12733704,12734784-12734909,
           12737281-12737409,12737486-12737540,12737633-12737808,
           12737903-12737986,12738602-12738625
          Length = 394

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -2

Query: 314 VMGSIDRSATCTTPARLSWKLKLTPPWYTNKLQYPKANSTAA--ALSXLRPPIPKQTGAK 141
           + G+IDRS     P+  +     TPP +   + Y   +   A      L PP P QT  +
Sbjct: 52  ISGTIDRSKAAPAPSAGTPGAGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQ 111

Query: 140 TPI 132
           TP+
Sbjct: 112 TPL 114


>02_03_0134 - 15596379-15597689
          Length = 436

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/65 (23%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +1

Query: 241 GVNFNFQESRAGV--VQVADLSIEPITKTSVDDIELNKNITLNDIFISVKTTKHYQYTRL 414
           G+N   Q  +  +   ++ + + E   K +VD+ ELN+ ++ ++++  V TTK+ +    
Sbjct: 309 GINSKVQAVKEAIDNSELKEAANETELKEAVDETELNEVVSESELYKDVNTTKYTEDALE 368

Query: 415 PIILK 429
           P++++
Sbjct: 369 PMLIE 373


>05_05_0039 -
           21782093-21782320,21782383-21782754,21783031-21783496,
           21784896-21784993,21785179-21785362,21785462-21785574,
           21785942-21786127,21786191-21786364
          Length = 606

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +3

Query: 114 PRLSR--AYRRFGASLLWNGRTKXA*GRSCAVSLRILQLISIPRRSQLQLPRKSGRCCA 284
           P LS    YR   A L+WNG  K      C++ L   Q  S  R +    PR    CC+
Sbjct: 392 PSLSHILTYRSASARLIWNGPHKYCDQSKCSLPL-WHQSTSATRTNSAVTPRALSLCCS 449


>01_07_0118 + 41176159-41178909
          Length = 916

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 586 GHIQRTFCSINVYVGATQSNLYSPCGHL 503
           GH+ R     NV++ A+  ++YS CG L
Sbjct: 696 GHVVRFGLQTNVFISASLVDMYSKCGRL 723


>09_06_0183 - 21406474-21406636,21407412-21407956
          Length = 235

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 215 YPKANSTAAALSXLRPPI-PKQTGAKTPIRARKPRR 111
           YP+    A  +S   PPI   ++ + TP+RAR+PRR
Sbjct: 109 YPRRPELAGYVSP--PPIRAARSSSATPVRARRPRR 142


>02_01_0498 - 3614621-3614674,3614780-3617161
          Length = 811

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 643 LRSCRRQSDRTIFYHSRET-GHIQRTFCSINVYVGATQSNLYSPCGHLSD 497
           + SC R S      H R+    + +     NVYVG+   ++Y+ CG++ D
Sbjct: 525 INSCSRLSS---IPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDD 571


>01_06_0084 + 26286463-26288259
          Length = 598

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -3

Query: 556 NVYVGATQSNLYSPCGHLSD 497
           +V+VG++  ++Y+ CGHL+D
Sbjct: 160 DVFVGSSVLDMYAKCGHLAD 179


>07_01_1052 -
           9234506-9235037,9235148-9235849,9236169-9236313,
           9236478-9237069
          Length = 656

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -2

Query: 281 TTPARLSWKLKLTPPWYTNKLQYPKANSTAAALSXLRPPIPKQTGAKTP 135
           T P    WK  + PP    KL+ P    T +A      PIPK+   + P
Sbjct: 145 TMPRNRYWKTPVKPPIPAKKLEQPAQKKTQSA------PIPKKVWREKP 187


>05_04_0248 - 19363567-19363814,19363900-19364092,19364202-19364846
          Length = 361

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 316 KTSVDDIELNKNITLNDIFISVKTTKHYQYTRLPIILKTWFQLAKE 453
           K  V D+E  KNI +N I +   T+K   +     +L+ W+   +E
Sbjct: 192 KRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEE 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,017,490
Number of Sequences: 37544
Number of extensions: 318349
Number of successful extensions: 1015
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)