Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_P09
(690 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43864| Best HMM Match : CBS (HMM E-Value=8) 59 4e-09
SB_50039| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 6e-07
SB_32545| Best HMM Match : CBS (HMM E-Value=5.4) 48 9e-06
SB_55727| Best HMM Match : Fringe (HMM E-Value=1.9e-35) 48 9e-06
SB_7447| Best HMM Match : CHGN (HMM E-Value=0) 42 4e-04
SB_51390| Best HMM Match : Galactosyl_T (HMM E-Value=2.9e-23) 30 2.0
SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10) 29 3.6
SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053) 29 4.7
SB_8477| Best HMM Match : Lectin_C (HMM E-Value=1.3e-05) 29 4.7
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27) 28 6.2
SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12) 28 6.2
SB_37120| Best HMM Match : EB (HMM E-Value=4.2) 28 8.2
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37) 28 8.2
>SB_43864| Best HMM Match : CBS (HMM E-Value=8)
Length = 198
Score = 58.8 bits (136), Expect = 4e-09
Identities = 39/112 (34%), Positives = 60/112 (53%)
Frame = +1
Query: 352 ITLNDIFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNC 531
I+ +DIF +VKTTK Y R+P++ KT Q AK F+++TE + G + NT+
Sbjct: 65 ISSDDIFFAVKTTKKYHGDRVPVVKKTLGQHAKHVV-FYSETEDPDVPTENIG-VPNTDT 122
Query: 532 SASHQRKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQ 687
+ K + + +V+ RF S K W DDD ++VPR+ +L Y Q
Sbjct: 123 GHCAKLKAIIDRSAVD-RRF--SDKPWLVVIDDDTIMSVPRMQQLLACYDPQ 171
>SB_50039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 51.6 bits (118), Expect = 6e-07
Identities = 17/38 (44%), Positives = 31/38 (81%)
Frame = +1
Query: 361 NDIFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTD 474
+D+F+++KTT++Y +R+ +++KTW LAKEQ + F+D
Sbjct: 150 SDVFLAIKTTRNYHQSRMQVLMKTWISLAKEQVYVFSD 187
>SB_32545| Best HMM Match : CBS (HMM E-Value=5.4)
Length = 336
Score = 47.6 bits (108), Expect = 9e-06
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +1
Query: 352 ITLNDIFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNC 531
I+ +DIF +VKTTK Y R+P++ KT Q AK F+++TE + G + NT+
Sbjct: 183 ISSDDIFFAVKTTKKYHGDRVPVVKKTLGQHAKHVV-FYSETEDPDVPTENIG-VPNTDT 240
Query: 532 SASHQRKHLCCKMSVEYDRFLESGKKWFCHFDDDNYV-NVP 651
+ K + + +V+ RF S K W DDD + +VP
Sbjct: 241 GHCAKLKAIIDRSAVD-RRF--SDKPWLVVIDDDTIMRSVP 278
>SB_55727| Best HMM Match : Fringe (HMM E-Value=1.9e-35)
Length = 200
Score = 47.6 bits (108), Expect = 9e-06
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +1
Query: 610 WFCHFDDDNYVNVPRLVSVLQTYKH 684
WFCHFDDDNYVN P L+ +L+ + H
Sbjct: 2 WFCHFDDDNYVNFPALIKLLREHNH 26
>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
Length = 918
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/103 (24%), Positives = 48/103 (46%)
Frame = +1
Query: 367 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCSASHQ 546
IFI V T + + +R + +TW + + FF+ + +K + N + + S Q
Sbjct: 63 IFIGVMTAEKFLDSRAKAVFETWGKKVPGKLEFFSSSSSKNNLNLPVVSLPGVDDSYPPQ 122
Query: 547 RKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQT 675
RK + + +D +++ +WF DDD Y+ +L L +
Sbjct: 123 RKSM-LMLKYMHDNYIDQ-FEWFMRSDDDVYIRTDKLSDFLHS 163
>SB_51390| Best HMM Match : Galactosyl_T (HMM E-Value=2.9e-23)
Length = 367
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +1
Query: 508 GHMVNTNCSASHQRKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSVLQT 675
G + T S+ +++ K+ Y L K+ DDD YVN+PRL+ L+T
Sbjct: 169 GDIYRTKIEESY--RNMIFKVWDAYKWALGVSPKYIFKADDDIYVNIPRLIHWLKT 222
>SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)
Length = 892
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 580 YDRFLESGKKWFCHFDDDNYVNVPRLVSVLQTYKHQ 687
YD +++G+KWF ++ ++ + V + Y HQ
Sbjct: 374 YDYIVKAGEKWFDRYEIESLIGKGSFGQVCKAYDHQ 409
>SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)
Length = 870
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 185 LSXLRPPIPKQTGAKTPIRARKPRRFXAQLLDXXQNTTEKRDXKD 51
+ +RP I KQT P K R+ ++ N +EKR D
Sbjct: 522 MKAMRPKIVKQTAFVIPSDETKEERYVSRRTGITTNNSEKRPSAD 566
>SB_8477| Best HMM Match : Lectin_C (HMM E-Value=1.3e-05)
Length = 332
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 565 KMSVEYDRFLESGKKWFCHFDDD 633
K++++ D F E KK +CH DDD
Sbjct: 20 KLNLKCDTFFEYPKKCWCHDDDD 42
>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 649 GHL-RSCRRQSDRTIFYHSRETGHIQR 572
GH R C +S R + Y +ETGH R
Sbjct: 63 GHFARDCDAESSRDVCYRCQETGHFAR 89
>SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27)
Length = 468
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 402 VHKITDHLEDLVPVSKRT-DMVLH--GHRNETTSKSDKWPHGE 521
V ++ +++L+ VS++ + VL G N T SK KW HGE
Sbjct: 255 VRAMSAGVDNLIKVSEQVREKVLEVTGGENITDSKGSKWKHGE 297
>SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12)
Length = 716
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 402 VHKITDHLEDLVPVSKRT-DMVLH--GHRNETTSKSDKWPHGE 521
V ++ +++L+ VS++ + VL G N T SK KW HGE
Sbjct: 34 VRAMSAGVDNLIKVSEQVREKVLEVTGGENITDSKGSKWKHGE 76
>SB_37120| Best HMM Match : EB (HMM E-Value=4.2)
Length = 376
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 209 KANSTAAALSXLRPPIPKQTGAKTPIRARKP 117
KA T + P PK+ AK P +A+KP
Sbjct: 295 KATPTKKPTPAKKKPAPKKPAAKKPAKAKKP 325
>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
Length = 646
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +1
Query: 487 QHQNQTNGHMVNTNCSASHQRKHLCCKMSVEYDRFLESGKKWFCHFDDDNYVNVPRLVSV 666
+ ++ G ++ N S+ ++L K+ ++ L ++ DDD YVN+P+L+S
Sbjct: 446 ERESNRFGDILRINKRESY--RNLVEKIQGSFEWALSVKPQYILKADDDVYVNMPKLISW 503
Query: 667 LQT 675
L +
Sbjct: 504 LHS 506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,246,327
Number of Sequences: 59808
Number of extensions: 388143
Number of successful extensions: 1073
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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