Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P09
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.3  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   6.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 601 GKKWFCHFDDDNYVNVPRLVSVLQTYKH 684
           G+ W    + D+Y N   +   L  YKH
Sbjct: 61  GQAWNIEANIDSYTNAAAVKEFLSIYKH 88


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 601 GKKWFCHFDDDNYVNVPRLVSVLQTYKH 684
           G+ W    + D+Y N   +   L  YKH
Sbjct: 61  GQAWNIEANIDSYTNAAAVKEFLSIYKH 88


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 487 QHQNQTNGHMVNTNCSASHQRKHLCCKMSV 576
           Q++NQ N H  +     +H R  L   +SV
Sbjct: 114 QYKNQNNNHYTSHQHLRTHLRGTLTVNVSV 143


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -2

Query: 350 FLFSSISSTLVLVMGSIDRSATCTTPARLSW 258
           F F  + + + L  G  D    C   +++SW
Sbjct: 7   FFFILVITLIFLYFGEADIKKDCRKESKVSW 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,068
Number of Sequences: 438
Number of extensions: 3518
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)