Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P08
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    30   0.33 
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    27   4.1  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    26   5.4  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   7.1  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   7.1  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   9.4  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   9.4  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +3

Query: 525 KHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLN 704
           KH N   S  QK  EW R   N  +++ IN+   D +   Q   HD  +  +   M TL 
Sbjct: 711 KHLNTIDS--QKAQEWRREINNQFQVSNINSTDRDTK---QPKMHDFRQPLHPNPMTTLK 765

Query: 705 FEDAQNSVNLLNSAI 749
            +   NS +   S +
Sbjct: 766 RKGQHNSFSYDKSTL 780


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 654 FHDNAKTYYETDMITLNFEDAQNSVNLLNSAISNFTHGKIP 776
           F   AK +Y+T  I+L       S+++LN   S  + G IP
Sbjct: 259 FKQTAKNFYDTLDISLLLGLFDKSISMLNCHSSKISDGDIP 299


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 576 RVNTNTIELAKINAIIVDKQRLPQQDFHDN---AKTYYETDMITLNFEDAQNSVNLLN 740
           R N+N  E+ ++NAI++D +   Q  F  N    + Y   D +    E+ + + +L+N
Sbjct: 254 RPNSNPFEVCELNAILLDAKIQNQLLFIRNLLHERKYVSIDELDAILEENEKNKHLIN 311


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +3

Query: 495 QINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKT 674
           ++ H  + Q       R++F K   WL    NT+  +K +   + K      +  ++ KT
Sbjct: 78  KLEHLWQKQINSITQMRTKFDKTKSWLSSKRNTLNKSKES---LQKDEAEYVELANSLKT 134

Query: 675 YYETDM 692
             ET++
Sbjct: 135 KVETNI 140


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
 Frame = +3

Query: 453 LAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVD- 629
           +A++ E         +     L   + NV +   + +   + +NT  +ELA +N  +V  
Sbjct: 535 MAMLRESYGTEINNLLERRNELLDDYNNVQKILNESLEASVHLNTKNLELADLNNNLVKQ 594

Query: 630 -KQRLPQQDFHDNAKTYYETDMITLNFEDAQNSVNLLNSAISN 755
            + R+P ++  +   T      IT + ++  +S+N L +  SN
Sbjct: 595 IQHRVPPENQSNLEHT------ITTSSKNTTSSINPLTAVSSN 631


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 351 EKIGNFSIELLYHTSNLEQSKGNLIMSPITVWTVLAVIAEGASGNTRRQINHA 509
           EKIG F  ++   T+N   S+G  I+    ++ ++ V     SG  R +   A
Sbjct: 114 EKIGFFPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSGENRLEYRRA 166


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 722 VLCIFEVKCYHISFIIGLCIVMKVLLW 642
           ++C+ E   Y IS ++ LC+ M    W
Sbjct: 130 LICLVETTVYQISVVLLLCLTMGWKSW 156


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/60 (18%), Positives = 29/60 (48%)
 Frame = +3

Query: 609 INAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQNSVNLLNSAISNFTHGKIPKIXD 788
           + + ++DK+RL  +    ++   Y+T +  L  E++   +N +          K+P++ +
Sbjct: 296 VESTVLDKRRLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEK-AIAKVPEVVE 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,672
Number of Sequences: 5004
Number of extensions: 65361
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)