Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P05
         (373 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   1.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   1.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   1.8  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   1.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   3.1  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    20   9.4  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 128 PRHASTLGMDPKFLRNQRFCKKGNLKP 208
           P+H S + +DPKF  ++ + +   + P
Sbjct: 19  PQHISGVVVDPKFPPSEEYNQNSYIPP 45


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 128 PRHASTLGMDPKFLRNQRFCKKGNLKP 208
           P+H S + +DPKF  ++ + +   + P
Sbjct: 19  PQHISGVVVDPKFPPSEEYNQNSYIPP 45


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 128 PRHASTLGMDPKFLRNQRFCKKGNLKP 208
           P+H S + +DPKF  ++ + +   + P
Sbjct: 19  PQHISGVVVDPKFPPSEEYNQNSYIPP 45


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 128 PRHASTLGMDPKFLRNQRFCKKGNLKP 208
           P+H S + +DPKF  ++ + +   + P
Sbjct: 19  PQHISGVVVDPKFPPSEEYNQNSYIPP 45


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = +1

Query: 52  AKSNHHPNHXQNRKAHSQWYQKAKEXQARIHPWHGSK 162
           A S HH +H Q R      Y  +     +++   G +
Sbjct: 49  ASSQHHHHHLQARPPQDSPYDASVAAACKLYSSEGQQ 85


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 113 KKPRXPRHASTL 148
           K P  PRHAS L
Sbjct: 192 KNPWFPRHASDL 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,267
Number of Sequences: 336
Number of extensions: 1282
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)