Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P05
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    38   7e-04
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    24   8.8  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 37.5 bits (83), Expect = 7e-04
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 104 NGIKKPRXPRHASTLGMDPKFLRNQRFCKKGNLKPAKQ 217
           NGIK+P+  R+ S    D KF RNQ+F  +G ++  +Q
Sbjct: 19  NGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56



 Score = 35.1 bits (77), Expect = 0.004
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 49  MAKSNHHPNHXQNRKAHSQWYQKAKEXQARIHPWHGSKIFKESKVLQEG*PEA 207
           MAKS +H NH QN+KAH    ++ ++ +     +  +K  +  K    G  EA
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEA 53


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 183 FARRVT*SQPSNSRGRLREKLPEKQRPRNEH*V*ANKRIKN 305
           F RR   + P  SR    ++LP    P N H V  N+  +N
Sbjct: 244 FERRFARTVPDASRHPYPDRLPTPLTPSNAHWVVHNEGNRN 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,105,915
Number of Sequences: 5004
Number of extensions: 18198
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)