Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P05
         (373 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.38 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.50 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   2.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   3.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   3.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   8.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 64  HHPNHXQNRKAHSQWYQKAKEXQARIHPWHGSKIFKESKVLQEG*PEASQAT 219
           HHPN   NRK H      +      +    GS+   +S +L    PEAS+AT
Sbjct: 401 HHPNCKINRKVHHTTSSSSAAGGEGLADRRGSE-SSDSVLLS---PEASKAT 448


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +1

Query: 55  KSNHHPNHXQNRKAHSQWYQKAKEXQARIHPWHGSK 162
           + N+H NH  N+  HS         Q      H SK
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSK 455


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 141 DACLGFLGFLIPLTVSFAVLVMIW 70
           D+ L FLG +  L++S  +L  IW
Sbjct: 95  DSRLSFLGPIKSLSLSIKMLERIW 118


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +1

Query: 70  PNHXQNRKAHSQWYQKAKEXQARIHPWHGSKIFKESKV 183
           PNH  ++    Q   K  E     + WH  KI    +V
Sbjct: 122 PNHTSDQHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRV 159


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +1

Query: 70  PNHXQNRKAHSQWYQKAKEXQARIHPWHGSKIFKESKV 183
           PNH  ++    Q   K  E     + WH  KI    +V
Sbjct: 122 PNHTSDQHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRV 159


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 306 YFLCVYLLIPNVHF 265
           + +CV +++ NVHF
Sbjct: 316 FSICVTVVVLNVHF 329


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 131 RHASTLGMDPKFL 169
           RH+STL +D K L
Sbjct: 241 RHSSTLDIDHKML 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,639
Number of Sequences: 438
Number of extensions: 1458
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)