Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P04
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    86   3e-18
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    84   9e-18
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    27   1.4  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    26   2.4  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   2.4  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   7.3  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   7.3  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   7.3  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   7.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   9.7  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    24   9.7  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 85.8 bits (203), Expect = 3e-18
 Identities = 38/81 (46%), Positives = 60/81 (74%)
 Frame = +3

Query: 120 QQQWSKGKVRXKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 299
           +++WSKGKV+ K  +  +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L
Sbjct: 4   KKKWSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDL 63

Query: 300 REKGLIKQVVQHHGQVIYTRA 362
            E+G+I++V QH  Q IYTRA
Sbjct: 64  AERGVIQKVDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 84.2 bits (199), Expect = 9e-18
 Identities = 37/80 (46%), Positives = 59/80 (73%)
 Frame = +3

Query: 120 QQQWSKGKVRXKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 299
           +++WSKGKV+ K  +  +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L
Sbjct: 4   KKKWSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDL 63

Query: 300 REKGLIKQVVQHHGQVIYTR 359
            E+G+I++V QH  Q IYTR
Sbjct: 64  AERGVIQKVDQHSKQAIYTR 83


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 117 SQQQWSKGKVRXKLNNQVLFDKPTYEKLYKEVPQYKLI 230
           ++  W+ G+V    +NQ L  KP Y   Y + P  KLI
Sbjct: 420 TEVSWTLGQVLLYASNQQLLAKPEYANYYMD-PYGKLI 456


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 72  KKHSIIRXXPVAAKPSQQQWSKGKVRXKLNNQVLFDKPTYEKLYKE 209
           K H++I   P   +  ++  S+ +    LN ++L  +  YEKLY++
Sbjct: 320 KYHAMIALRPKLVRLIEKYASQKEELMDLNERLLVARRDYEKLYEQ 365


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 335 MLDYLFDETFFPKLDECSSR 276
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 394 IVYATGSSPLVARV*ITCP*CWTTCLMRP 308
           I+Y T ++P++  + +T   CW   L  P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -1

Query: 245 YDSRCD*LVLWDFLVQFLICGFIKQHLVVQLXTNFXFGPLLLTWLCRHRXLPDDAVFFEA 66
           Y +RC  + +   + QFL     K+  +V L   +   PL    L  H    DD VF++ 
Sbjct: 63  YWTRC--MAIRFAVYQFLKNKTGKRKAIVNLGAGYD--PLAFQLLSSHEYNTDDVVFYDV 118

Query: 65  VWPK 54
            +P+
Sbjct: 119 DYPE 122


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 246 SERLKVRGSLARRALIELREKGLIKQVVQHHGQVIY 353
           +ERL +  ++ R AL+EL++  LIKQ      QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 86  DAVFFEAVWPKPXRPDWAADLNWKASAG 3
           +  F + VWP   RPD+  + +  A++G
Sbjct: 121 EQTFVDKVWPYTNRPDYHCEPSVMAASG 148


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 252  RLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 377
            R   RG++  R +I  +EK  +++VV   G+   TR TK  D
Sbjct: 1551 RFITRGTIEERIVIRAKEKEEVQKVVISGGE---TRPTKQMD 1589


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 138 GKVRXKLNNQVLFDKPTYEKLYKEVPQYKLITPAVV 245
           G+   KLN     +K   E   + +P+ KL+TPA++
Sbjct: 232 GEKARKLNKSEKTNKYHTEWNLEHIPRLKLVTPALM 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,268
Number of Sequences: 5004
Number of extensions: 24731
Number of successful extensions: 84
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)