Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_P04
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 109 8e-25
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 109 1e-24
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 73 1e-13
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 32 0.25
12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525 30 0.78
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 30 0.78
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422 30 1.0
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 29 1.4
02_02_0584 - 11853149-11853573,11853673-11853787,11853868-118539... 29 2.4
03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635 28 4.2
02_03_0349 + 18010414-18014283 27 5.5
12_01_0864 - 8205371-8205913,8206304-8206452,8206677-8206737,820... 27 7.3
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 27 7.3
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 27 9.6
01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038 27 9.6
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 109 bits (263), Expect = 8e-25
Identities = 50/85 (58%), Positives = 67/85 (78%)
Frame = +3
Query: 111 KPSQQQWSKGKVRXKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRAL 290
K +++WSKGK + K+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+
Sbjct: 22 KQKKKKWSKGKQKEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAM 81
Query: 291 IELREKGLIKQVVQHHGQVIYTRAT 365
+L ++GLI+ V H Q IYTRAT
Sbjct: 82 KDLMDRGLIRMVSVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 109 bits (262), Expect = 1e-24
Identities = 50/85 (58%), Positives = 66/85 (77%)
Frame = +3
Query: 111 KPSQQQWSKGKVRXKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRAL 290
K +++WSKGK + K+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+
Sbjct: 22 KQKKKKWSKGKQKEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAI 81
Query: 291 IELREKGLIKQVVQHHGQVIYTRAT 365
+L +GLI+ V H Q IYTRAT
Sbjct: 82 NDLMTRGLIRMVSVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 72.5 bits (170), Expect = 1e-13
Identities = 31/50 (62%), Positives = 41/50 (82%)
Frame = +3
Query: 111 KPSQQQWSKGKVRXKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 260
K +++WSKGK + K+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 956 KQKKKKWSKGKQKEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +3
Query: 261 VRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 365
+ GSLAR+A+ +L +G I+ V H Q+IYTRAT
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 31.9 bits (69), Expect = 0.25
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 228 ITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 374
+TPAV E+ + + AR+ L + RE I+ +QH+ Q+++ +K D
Sbjct: 613 LTPAVYLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLD 661
>12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525
Length = 212
Score = 30.3 bits (65), Expect = 0.78
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 228 ITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 374
ITPAV E+ + + A++ L + RE+ I+ +Q + Q++Y +K D
Sbjct: 116 ITPAVYLEQHQFKLERAKQRLADRRERMDIEATIQANRQLVYEEKSKLD 164
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 30.3 bits (65), Expect = 0.78
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 203 VQFLICGFIKQHLVVQLXTNFXFGPLLLTWLCRHRXL 93
VQ ++ GFI+ H TNF G L W+C R L
Sbjct: 315 VQLVLVGFIELHDAFFHSTNFNDGALTYRWICICRRL 351
>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
Length = 259
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +3
Query: 225 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 374
++TPA E+ + + A++ L+E RE+ I+ +Q + Q+++ +K D
Sbjct: 167 VLTPAAYFEQHQFKLEKAKQRLVERRERKEIEATIQANRQLVHEEKSKLD 216
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +3
Query: 225 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 374
+ITPA+ E+ + + A++ + + RE+ +I+ +Q + Q+++ K D
Sbjct: 237 IITPAIYLEQHQFKLEKAQQRIADRRERKVIEATIQANRQLVHEEKAKLD 286
>02_02_0584 -
11853149-11853573,11853673-11853787,11853868-11853981,
11854049-11854108,11854265-11854600,11854681-11854724,
11854776-11855507,11855736-11855921,11856012-11856153,
11856250-11856300
Length = 734
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 225 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 374
++TPAV E+ + + A+ L E RE+ I+ +Q + Q+++ +K D
Sbjct: 599 ILTPAVYLEQHQFKLKKAKLRLAERRERKDIEATIQANRQLVHEEKSKLD 648
>03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635
Length = 603
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 322 CLMRPFSLSSMSALLAREPRTFNL 251
C +RP S +++ AL+AR PR L
Sbjct: 217 CYVRPVSFAALEALVARSPRLTRL 240
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 180 KPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRE 305
KPT E+L K +PQ K++ AV E + + L +LR+
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHIGDQSDALDAWLWQLRD 80
>12_01_0864 -
8205371-8205913,8206304-8206452,8206677-8206737,
8206815-8206917,8207197-8207492
Length = 383
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 225 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 374
++TP V E+ + + A+ L E RE+ I+ +Q + Q+++ +K D
Sbjct: 280 ILTPGVYLEQHQFKLEKAKLRLAERRERKDIEATIQANRQLVHEEKSKLD 329
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 261 VRGSLARRALIELREKGLIKQVVQHHGQVIYT 356
+RG +RAL +R+ G I++VVQ+ Q Y+
Sbjct: 239 IRGIGGQRALKLIRQHGYIEEVVQNLSQTRYS 270
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 404 NLYHSLCDWIIALGRTRVDHLPMMLDYLF 318
NL+H++ DW A +RV LP + +F
Sbjct: 347 NLFHTITDWYSAYVSSRVTDLPNRPNVVF 375
>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
Length = 650
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 304 SLSSMSALLAREPRTFNLSDTTAGV---ISLYCGT 209
S S + R+P ++NL D TAG + L CG+
Sbjct: 173 SCSCLKGFSIRDPNSWNLGDQTAGCRRNVMLQCGS 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,711,633
Number of Sequences: 37544
Number of extensions: 171121
Number of successful extensions: 385
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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