Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P04
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)              146   1e-35
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   9.9  
SB_12744| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score =  146 bits (353), Expect = 1e-35
 Identities = 67/89 (75%), Positives = 79/89 (88%)
 Frame = +3

Query: 111 KPSQQQWSKGKVRXKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRAL 290
           K  +++WSKGKVR KLNN VLFDK TY+KLYKEVP Y+LITP+VVSERLK+RGSLARRAL
Sbjct: 26  KAKKKKWSKGKVRDKLNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRAL 85

Query: 291 IELREKGLIKQVVQHHGQVIYTRATKGDD 377
           +EL+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 86  LELQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 211 TSLYSFSYVGLSNNTWLFNLXRTXPLDH 128
           +SL+     G+SN+ WL N   T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_12744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 69  LKKHSIIRXXPVAAKPSQQQWSKGKVRXKLNNQVLFDKPTYEKLYKE 209
           L  H  ++    + +  +  WS G ++ KL N  L  +  Y K  KE
Sbjct: 280 LSAHKSLQFAGGSTRDLEGHWSSGCLQTKLKNYTLSLRAGYRKSLKE 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,254,940
Number of Sequences: 59808
Number of extensions: 203642
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)