Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P04
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   132   1e-31
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    28   2.8  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   5.0  
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    27   5.0  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    27   5.0  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  132 bits (319), Expect = 1e-31
 Identities = 63/91 (69%), Positives = 74/91 (81%)
 Frame = +3

Query: 111 KPSQQQWSKGKVRXKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRAL 290
           K  +++WSKGKVR KLNN VLFD+ TY+KLYKEV  YKLITP+VVSERLKVR SLA+  L
Sbjct: 25  KAKKKKWSKGKVRDKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGL 84

Query: 291 IELREKGLIKQVVQHHGQVIYTRATKGDDPV 383
            EL+ KGL+K VV HHGQV+YTRATK  D +
Sbjct: 85  KELQAKGLVKCVVHHHGQVVYTRATKEADVI 115


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 144 VRXKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 275
           V  K  N +LFD+   EKL++++ +  +  P  V E+L +VR +L
Sbjct: 688 VYGKNTNCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 295 SMSALLAREPRTFNLSDTTAGVISLYCG 212
           S++  ++ E   F+LSDT   ++ L+CG
Sbjct: 2   SVNRTISLENGKFDLSDTIVNIVELFCG 29


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 304 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 167
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform b protein.
          Length = 1090

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 304 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 167
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 255 LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 359
           L V+GS+ + A +ELR   +  Q +  H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,090,213
Number of Sequences: 27780
Number of extensions: 149044
Number of successful extensions: 406
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)