Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P03
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    30   0.42 
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    27   2.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.9  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    27   3.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   3.9  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    25   9.0  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 344 EEILLINDVASVQPDTLEATTKKSEPSLTVVLPYTPRDGSSLQELYTRP-PRVEIVPASE 520
           +EI    D   V    L     KSE  L  ++  +P+D +S + L T+  P  E + AS 
Sbjct: 349 DEIFACED--DVHYTALPKQNPKSERILEPIIA-SPKDNTSDKGLLTKSAPTFEELQAS- 404

Query: 521 VTPQPIKTS 547
           +TP+P+KTS
Sbjct: 405 ITPKPVKTS 413


>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 114 WISXKQ*NKYKIFCSHILNSLDLPAKR 194
           W+  ++  K   FC H +  LD+P KR
Sbjct: 100 WLGEEKYQKLVNFCLHYIADLDIPVKR 126


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 389  CLAELKPHHLSIKFPHFLTSALLNIFH 309
            CL     H  S++  H + + LLNI+H
Sbjct: 3298 CLLSFSQHAASLRICHGIDAMLLNIYH 3324


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 5/131 (3%)
 Frame = +2

Query: 140 VQNILQSHSELPRLTREEIIQ-LMNDIKAEDXXXXXXXXXXXXXNEIKITTPYSTSDNEI 316
           ++ IL+S +  P L R EI +   NDIK  D             ++ ++    ST  + +
Sbjct: 421 IRYILESAATGPFLPRVEIYEDYYNDIK--DQIFGVDVEFLSHRDKKRVPIIVSTILSYL 478

Query: 317 YSVTQTLKNEE----ILLINDVASVQPDTLEATTKKSEPSLTVVLPYTPRDGSSLQELYT 484
             +  TL ++E    I L+N   S      EA    S  +  V+  YTP     + +LY 
Sbjct: 479 DLLYPTLASDEVRQNIWLVNSPLSSVHQLREALNHSSSVTKEVLSQYTPSVVIGVLKLYF 538

Query: 485 RPPRVEIVPAS 517
                 IVP+S
Sbjct: 539 LELPDSIVPSS 549


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 131 VKQVQNILQSHSELPR---LTREEIIQLMNDIKAE 226
           +  +QN L+S  E+     +T+E ++QL ND++ E
Sbjct: 845 INNLQNQLESTKEVANELTITKERVLQLTNDLQEE 879


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +2

Query: 119 IEXTVKQVQ---NILQSHSELPRLTREEIIQLMNDI 217
           +E +VK++    ++LQ H   P ++ EE+++ +ND+
Sbjct: 139 VEDSVKRLGTYIDVLQIHRYDPHVSAEEVMRALNDV 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,773
Number of Sequences: 5004
Number of extensions: 48693
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)