Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_P03
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    28   6.3  
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical
           protein C27A12.7a protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +2

Query: 299 TSDNEIYSVTQTLKNEEILLINDVASVQPDTLEATTK---KSEPSLTVVL--PYTPRDGS 463
           TSDN+     +  K+E  +L ND+   + +T  A  +   + +P +  +L   Y     S
Sbjct: 37  TSDNDTSYAKEDKKSENEVLDNDLLEAEMNTTIADVQAVLQVDPGVCRILLHKYKWNKES 96

Query: 464 SLQELYTRPPRVEIVPASEVTPQ 532
            L+ LY  P  +  +  ++V P+
Sbjct: 97  LLERLYEHPDTIAFLIDAQVIPR 119


>Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 421 WFTFLCRCLKCVWLN*SHIIY 359
           W   +C CL  VWLN   +IY
Sbjct: 96  WTCQMCSCLNLVWLNVDKLIY 116


>Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 421 WFTFLCRCLKCVWLN*SHIIY 359
           W   +C CL  VWLN   +IY
Sbjct: 96  WTCQMCSCLNLVWLNVDKLIY 116


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +2

Query: 11   VDAKRESAVCSEFILXHMKFLWYFIAVMXVAES-AVDIEXTVKQVQNILQSHSEL 172
            VDA + +A  ++ I+ H+KFL  F+  + + +S A+  + T++ +  IL    EL
Sbjct: 2159 VDAVKTAATYTQLIISHLKFLAPFLRNIQLPKSIAILYKGTLRVLLVILHDFPEL 2213


>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
           protein Y54E2A.6 protein.
          Length = 1798

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 281 ITTPYSTSDNEIYSVTQTLKNEEILLINDVASVQPDTLEATT 406
           + T  STSDN + +V + L  +E+ L++D      +TL A T
Sbjct: 207 VITRKSTSDNSLINVVRLLIIDEVHLLHDERGPVIETLVART 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,908,843
Number of Sequences: 27780
Number of extensions: 272955
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)