Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_P02
(793 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44) 123 2e-28
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 29 5.7
SB_32154| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_20950| Best HMM Match : PHD (HMM E-Value=0.2) 28 7.5
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_16356| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_16289| Best HMM Match : Phage_integrase (HMM E-Value=0.4) 28 10.0
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) 28 10.0
SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
Length = 303
Score = 123 bits (296), Expect = 2e-28
Identities = 60/143 (41%), Positives = 87/143 (60%), Gaps = 3/143 (2%)
Frame = +1
Query: 367 KMFDDLLPEVIMTLQNKSKLSEVPQIGD---WLKKMLHYNLVGGKHTRGITTVISYKTIE 537
K+FDD P + L + + IGD WL+++L YN+ GGK RG++ + S + +
Sbjct: 19 KLFDDAFPGFVNDLVQEEENDLA--IGDSIKWLREVLEYNVPGGKRNRGLSVIGSLRHLI 76
Query: 538 KPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFND 717
+ E T+ L++A LGWCVE FQA+ +V DDIMD S RRG PCWYR+PEVG A ND
Sbjct: 77 REEHFTDEHLRVALLLGWCVEWFQAFFLVADDIMDQSMTRRGQPCWYRQPEVG-NIAIND 135
Query: 718 SLLIHSSLFEFLKTNXRTNPNYM 786
++I ++F LK + + Y+
Sbjct: 136 GIMIEQTVFRLLKKHIKHQSYYV 158
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +1
Query: 382 LLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK-PEKVTE 558
++ E +M + + L+E WL+K + +G + G ++ +T+E E+ E
Sbjct: 98 MIQEEVMIIAERLGLNEFTGSNGWLEKFKRQHNIGQRAVSGEEAGVNPETVESWKERARE 157
Query: 559 HTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPC 672
T K W V+ + C+ + + S RGM C
Sbjct: 158 ITRGWDAKNVWNVD--ETGCL-WRGLPEKSLNERGMRC 192
>SB_32154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = +1
Query: 217 LHDIVDMSVFNCLKFTRKVTYKYWPQLIRYKNNSANMTTASKNL-------EIINEKKMF 375
+H +D +F C+ TRK ++ +P++ S + SK I+N F
Sbjct: 99 IHSEMDSEMFRCVSSTRKRNFRPYPEIFENALQSGFFLSDSKTYCVDGSIRNILNTLTSF 158
Query: 376 DDLLPEVIM 402
+LPE+ +
Sbjct: 159 CWILPEITL 167
>SB_20950| Best HMM Match : PHD (HMM E-Value=0.2)
Length = 298
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 645 TIHNVIQHNAICLKHFDTPSQLTSHFQSMFGDFFRFFNCF 526
T+H +Q A+ L+ TP+ L + Q FR NC+
Sbjct: 136 TVHEALQSVAVTLRVTTTPAALNAPLQGASHSPFRLRNCW 175
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 358 NEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHT 498
N+ K F L EV +Q+K Q DWL+KML N+ G T
Sbjct: 10 NKHKSFG-LTAEVNRKIQSKYDTELEMQCRDWLEKMLGENIEWGVET 55
>SB_16356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 87 LWFLLITFSWIILRHYCLSSAVWIATWSEVLKIETYLVLPAYWTS 221
L F I+ + Y LS+ IA W +V KIE+ + L +YW S
Sbjct: 19 LHFPGISSDYATTPRYDLSADFTIAMWVKVFKIES-MFLYSYWAS 62
>SB_16289| Best HMM Match : Phage_integrase (HMM E-Value=0.4)
Length = 158
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +1
Query: 253 LKFTRKVTYKYWPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSE 432
LKF+R + +L Y+N+ + + E + K+ P +++ Q K
Sbjct: 16 LKFSRPSKHFGRLELKAYENDK-RLCVVTIIKEYVERTKLLRGNDPRFLISFQKPHKPIS 74
Query: 433 VPQIGDWLKKML 468
IG WLKK+L
Sbjct: 75 TDTIGRWLKKVL 86
>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
Length = 1241
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/56 (19%), Positives = 29/56 (51%)
Frame = +1
Query: 280 KYWPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIG 447
++W + + KN+ + + II++ K+ +LL + ++ L+++P +G
Sbjct: 375 RFWSYIKQLKNDDPGVADFKVDDRIISDGKLKSELLSKQFCSVFTVEDLTDIPSVG 430
>SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 690
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 561 YFENGL*AGMVCRNVSGILHCAG*HYGWFKRSTRHAL 671
+ NGL G +S L AG H +F RSTR +L
Sbjct: 578 WMSNGLSQGTTGAKLSPSLSIAGWHSAYFVRSTRRSL 614
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,711,661
Number of Sequences: 59808
Number of extensions: 518968
Number of successful extensions: 1367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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