Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O24
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    29   0.54 
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    28   1.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.2  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    28   1.6  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.2  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.8  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   5.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   6.6  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.7  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    25   8.7  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    25   8.7  

>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 29  KRKRFAARLNTLKGIVCYEDPRPNVILCNVGQATGFDKQK 148
           ++  +    N+  G + Y  PRPN +  +VG A+G D+Q+
Sbjct: 38  RKPSYTQNPNSGPGKLHYASPRPNNVSSSVGVASGGDRQE 77


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +2

Query: 455 VETTLKNRQVKHYGYEFR-YGSNDVDLS--CPLQEKIPKICKLLWRRLQ 592
           VE TLKN  +KH  Y  + + +N+ D+S    L+E+I K+      ++Q
Sbjct: 148 VEATLKNEILKHQAYVSKNHEANEKDVSSNVSLEEEIVKMTSFTGEKVQ 196


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -2

Query: 351 SVSGTFSTNVT*SVVPFSSTCAFPLHAS*NSDAFSA----LSNMRYE*DSPFSATNLGNG 184
           SVS T  +  T SV+P SS  + PL ++ ++ A SA    L+++     +  S+T  GN 
Sbjct: 515 SVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNSTTATSASSTPFGNS 574

Query: 183 VFTLYSVSSFNSFCLSN 133
             T  +  S   F  +N
Sbjct: 575 TITSSASGSTGEFTNTN 591


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 244 SRECITIL*GMQWESTGR*EWNNTLC---DIC*KCSG 345
           S + IT++ G QW   G+ +  + LC   D+C +C G
Sbjct: 12  SNDGITVVLGSQWGDEGKGKLVDILCDNVDVCARCQG 48


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/76 (28%), Positives = 31/76 (40%)
 Frame = +2

Query: 506 RYGSNDVDLSCPLQEKIPKICKLLWRRLQHYGYDLGVPVQLTVNKYLPGQGIPSHVDKHS 685
           +YG      S  L    PK+ + L   L+HY    G P  L   K    + + +  D  S
Sbjct: 451 KYGYYTTQNSYFLSRDTPKL-RALVDALRHYDTKSGYPATLGSKKITNVRDLTTGYDSSS 509

Query: 686 PFGETILALSLGSDVV 733
             G+  L +S  SD V
Sbjct: 510 TDGKATLPVSKSSDNV 525


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 540 HCRKKYQRFVNCCGEGSNTMVTISEYQFS*LLTS 641
           +CR++YQ    C   G N + TI+E   S  L S
Sbjct: 232 NCRRRYQSSAKCSVPGFNALGTIAETVLSKSLNS 265


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 398 DFLTEDEEKLFLNTFNIQHVETTLKN 475
           DF TED ++LFL  FN   + T L+N
Sbjct: 124 DFSTEDLKQLFLLIFNNGKLRTLLQN 149


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 410  EDEEKLFLNTFNIQHVETTLKNRQVKHYGYEFRYGSNDVDLSCP 541
            E+E+KL +N  + + +   L  R +  +G    YG+N +  S P
Sbjct: 1797 EEEQKLPVNEQSERFLSGELVTRIINEFGRSLYYGTNHIYESMP 1840


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 356 ICKHPNPKGLHIIPDFLTEDEEKLFLNTFNIQHVETTLKNRQVKHY 493
           IC+H    G   + + L  ++   FLN FN +H++     RQ K+Y
Sbjct: 191 ICEHIE-NGSQTVLEILLMNQNS-FLNNFNFEHIKADFAFRQ-KNY 233


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = -1

Query: 640 LVNSQLNWYSEIVTIVLEPSPQQFTNLWYFFLQ---WATQVNVIAAISELITIM 488
           L N  +N+ +E  TIV E  P++ TN+  +F+Q   +  ++N  A++  +I+ +
Sbjct: 709 LSNHLVNFVTE--TIVQEEEPRRRTNVLAYFIQVCDYLRELNNFASLFSIISAL 760


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 53  LNTLKGIVCYEDPRPNVILCNVGQATGFDKQKLLK 157
           LN   G + Y+DP PN++   +G     D +  LK
Sbjct: 92  LNETLGALIYDDPGPNILDEWLGNPNPLDLKLFLK 126


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 690 NGLCLSTCDGIPCP 649
           +GLC S   GIPCP
Sbjct: 151 HGLCFSVRPGIPCP 164


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 571 IAVEKAPTLWLRSRSTSSADC*QVLTWAR 657
           +A +     W  S   +S DC Q + W R
Sbjct: 665 VAFDGVAAFWANSEERASPDCQQAIEWFR 693


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,976
Number of Sequences: 5004
Number of extensions: 77334
Number of successful extensions: 245
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)