Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_O24
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1056 - 30447791-30447850,30448020-30448085,30448299-304485... 75 8e-14
10_08_0028 - 14262607-14262783,14262886-14262932,14263014-142632... 33 0.18
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 31 0.74
11_06_0608 - 25442883-25443206,25443420-25443623,25443831-254438... 31 0.74
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203... 31 1.3
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 30 1.7
12_02_0784 - 23130783-23131273,23131701-23131778,23131913-231319... 29 5.2
02_03_0020 - 13996688-13996785,13997168-13997217,13997516-139976... 28 6.9
01_05_0554 + 23221374-23222017,23222158-23222296 28 9.1
>04_04_1056 -
30447791-30447850,30448020-30448085,30448299-30448583,
30448744-30448869,30449068-30449154,30449273-30449695
Length = 348
Score = 74.5 bits (175), Expect = 8e-14
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Frame = +2
Query: 380 GLHIIPDFLTEDEEKLFLNTFNIQHVETTLKNRQVKHYGYEFRYGSNDVDLSCPLQEKIP 559
G++++PDF+T EE+ L + + ++ K R+V+HYG+EF Y + +VD L E P
Sbjct: 127 GIYLVPDFVTAAEEQELLAAVDNRPWKSLAK-RRVQHYGFEFLYETRNVDSKQFLGELPP 185
Query: 560 KICKLLWRRLQHYGYDLGVPV---QLTVNKYLPGQGIPSHVDKHSPFGETILALSLGSDV 730
+ K++ + + G + QLTVN+Y G G+ H+D HS F E I +LSL
Sbjct: 186 FVSKIIDKIMSFPGANKCTSKLVDQLTVNEYPCGVGLSPHIDTHSAFEEMIFSLSLAGPC 245
Query: 731 VMDW 742
+M++
Sbjct: 246 IMEF 249
>10_08_0028 -
14262607-14262783,14262886-14262932,14263014-14263281,
14263374-14263486,14264362-14264400,14264531-14264591,
14264685-14264834
Length = 284
Score = 33.5 bits (73), Expect = 0.18
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Frame = +2
Query: 368 PNPKGLHIIPDFLTEDEEKLFLNTFNIQHVET--TLKNRQVKHYGYEFRYGSNDVDLSCP 541
P P L++ P F+++ E+ L+ +LKNR+++++G V
Sbjct: 28 PIPTLLYV-PGFISDAEQSQLLHHIYQAPAPKWKSLKNRRLQNWG-------GVVHEKGL 79
Query: 542 LQEKIPK-ICKLLWRRLQHYGYDLGVPVQLTVNKYLPGQGIPSHVDKHSPFGETILALSL 718
L + +P + K+ R Q G + +N+Y P QGI H D + F + +SL
Sbjct: 80 LPQALPSWLTKITDRICQWTGLFPSAINHVLINEYHPNQGIMPHQDGPAYF-PVVAIISL 138
Query: 719 GSDVVMDWXHH 751
S VV+D+ H
Sbjct: 139 ASPVVIDFTPH 149
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 31.5 bits (68), Expect = 0.74
Identities = 23/77 (29%), Positives = 32/77 (41%)
Frame = -2
Query: 429 NNFSSSSVRKSGIICKPLGFGCLQIISVSGTFSTNVT*SVVPFSSTCAFPLHAS*NSDAF 250
N F ++SV GFG + F+ S PF+ST + PL +S F
Sbjct: 267 NAFQTTSVSNPFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSLF 326
Query: 249 SALSNMRYE*DSPFSAT 199
A S + SPF A+
Sbjct: 327 -ANSTPGFASSSPFGAS 342
>11_06_0608 -
25442883-25443206,25443420-25443623,25443831-25443859,
25444335-25444557
Length = 259
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 623 QLTVNKYLPGQGIPSHVDKHSPFGETILALSLGSDVVM 736
Q+ N+Y PG+GI +HVD F + I +SL S VM
Sbjct: 142 QMIANRYEPGEGICAHVDL-MRFDDGIAIVSLESPCVM 178
>06_01_0275 +
2029542-2029689,2029777-2030295,2030657-2030754,
2031718-2032028,2032560-2032631,2032729-2033398
Length = 605
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 548 EKIPKICKLLWRRLQ--HYGYDLGVPVQLTVNKYLPGQGIPSHVDKH 682
+ +P + K++ +RL H +P VN Y PG IP H+D H
Sbjct: 271 DPMPSLFKIMIKRLVRWHVLPKTCIPDSCIVNIYDPGDCIPPHIDSH 317
>01_05_0705 +
24424457-24424948,24425520-24425624,24426097-24426207,
24426675-24426857,24427066-24427192,24427336-24427397,
24427638-24427724,24428703-24428789,24429210-24429323,
24429507-24429635,24429834-24429896,24430333-24430494,
24430611-24430729,24430786-24431794
Length = 949
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = +2
Query: 53 LNTLKGIVCYEDPRPNVILCNVGQATGFDKQKLLKLLTEYKVNTPLPKFVAEK---GESY 223
L TL+ + P ++C +G A KQ ++ EY + P A + +
Sbjct: 545 LQTLRRCTAVDHTAPT-LMCTLGVANAIFKQCGVEFAAEYVIPLVFPLLTAHQLNVQQFA 603
Query: 224 SYLMFDKAENASLFYEACNGK--AQVDENGTT 313
Y++F K ++ FY K V +NG T
Sbjct: 604 KYILFVKDITSAYFYSKIEEKRGVTVTDNGNT 635
>12_02_0784 -
23130783-23131273,23131701-23131778,23131913-23131969,
23132062-23132116,23132738-23133010
Length = 317
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 389 IIPDFLTEDEEKLFLNTFNIQHVETTLKNRQVKHY 493
+ P+F DEEKL+ NIQ +E+ L ++++HY
Sbjct: 100 VAPEFADADEEKLY-EFLNIQ-MESDLNLKRMRHY 132
>02_03_0020 -
13996688-13996785,13997168-13997217,13997516-13997619,
13997664-13997764,13998436-13998505,13998604-13999422,
14000894-14001052
Length = 466
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +2
Query: 455 VETTLKNRQVKHYGYEFRYGSNDVDLSCPLQEKIPKICKLLWRRL----QHYGYDLGVPV 622
+ET+ + KH YE S + Q++ P+ C + L H D+ +
Sbjct: 274 LETSTLEDERKHSTYEHESFSFKIPQDSCSQKESPESCSISTTSLCEDHNHLPNDVPLVK 333
Query: 623 QLTVNKYLPGQGIPSHV 673
+T+NK LPG HV
Sbjct: 334 LVTINKALPGDTPDYHV 350
>01_05_0554 + 23221374-23222017,23222158-23222296
Length = 260
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 296 DENGTTLYVTFVENVPD-TDIICKHPNPKGLHIIPDFLTEDE 418
D G+ + + + N D T ++C+ PNP+ H D + E E
Sbjct: 130 DLKGSFMSLDDIVNSEDYTRVVCRGPNPRTTHFFGDHVLEFE 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,303,972
Number of Sequences: 37544
Number of extensions: 466258
Number of successful extensions: 1041
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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